[BioC] question using GSEABase
Martin Morgan
mtmorgan at fhcrc.org
Fri May 22 17:38:23 CEST 2009
chunjiang he wrote:
> hi all,
> I have used GOstats and topGO to get the GO anotations of my Gene list. Now
> I hear about GSEABase can do more things about pathway analysis. I installed
> the GSEABase packages and study it. But I think I can't get the pathway
GSEABase provides classes for organizing gene sets, and for accessing
gene sets available in other locations (such as those at the Broad). It
does not provide gene set analysis functionality. In addition to GOstats
and topGO, there is also the Biocondcutor package Category, and third
party tools.
Martin
> analysis tools in GSEABase. And what is the result of GSEA pathway analysis.
> Anyone can help me.
> Best,
> Chunjiang
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
--
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
Location: Arnold Building M1 B861
Phone: (206) 667-2793
More information about the Bioconductor
mailing list