[BioC] A question on microarray timeseries data

[Anjan Purkayastha]

Hi,
I'm comparing the response of two viral strains to their host 
environments over a timecourse. Viral RNA abundance is measured at 0, 
0.5, 1, 2, 4, 6, 18 and 24 hours post-infection. I am looking for 
procedures that will identify viral homologues in the two strains that 
show differential expression. For example, consider gene A1 in strain 1 
and its homologue A2 in strain 2.  I need a procedure that can identify 
whether the abundance profile of A1 is significantly different from that 
of A2 over the timecourse.
TIA,
Anjan

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anjan purkayastha, phd
bioinformatics analyst
whitehead institute for biomedical research
nine cambridge center
cambridge, ma 02142

purkayas [at] wi [dot] mit [dot] edu  
703.740.6939