January 2004 Archives by date

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Starting: Fri Jan 2 10:04:14 MEST 2004
Ending: Sat Jan 31 21:26:43 MEST 2004
Messages: 249

• [BioC] Heatmap   Johan Lindberg
• [BioC] Heatmap   Laurent Gautier
• [BioC] Heatmap   Johan Lindberg
• [BioC] Heatmap   Johan Lindberg
• [BioC] Installing Bioconductor on MAC   Floor Stam
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] R 1.8.1   Knud Josefsen
• [BioC] error "evaluation nested too deeply" {was "Heatmap"}   Martin Maechler
• [BioC] R 1.8.1   Rafael A. Irizarry
• [BioC] Re: R 1.8.1   Knud Josefsen
• [BioC] Fwd: replicate spots and dupcor.series   Simon Melov
• [BioC] Fwd: replicate spots and dupcor.series   Gordon K Smyth
• [BioC] MarrayNorm question.   Jean Yee Hwa Yang
• [BioC] How could I get library estrogen?   Hao Sun
• [BioC] information about Li-Wong   Bettina Harr
• [BioC] How could I get library estrogen?   Jeff Gentry
• [BioC] information about Li-Wong   James MacDonald
• [BioC] postdoc available   Jean-Philippe Vert
• [BioC] normalize.invariantset usage   david neil hayes
• [BioC] normalize.invariantset usage   Ben Bolstad
• [BioC] normalize.invariantset usage   Laurent Gautier
• [BioC] Hu6800 annotation file   Zhang, Hongen (NIH/NCI)
• [BioC] Hu6800 annotation file   Sean Davis
• [BioC] Affy Install   Jason Skelton
• [BioC] affy 1.3.27 supports binary cel files   Ben Bolstad
• [BioC] conditional selection: extracting row from matrix   Straubhaar, Juerg
• [BioC] conditional selection: extracting row from matrix   John Zhang
• [BioC] conditional selection: extracting row from matrix   w.huber at dkfz-heidelberg.de
• [BioC] typo in multtest ?   Hugues Leroy
• [BioC] Question   Riki Kawaguchi
• [BioC] conditional selection: extracting row from matrix   w.huber at dkfz-heidelberg.de
• [BioC] GEO data extraction   Sean Davis
• [BioC] barley1-Probe package   U. Baumann
• [BioC] Question   Laurent Gautier
• [BioC] GEO data extraction   John Zhang
• [BioC] Affy cel file processing - system requirements   Francois Collin
• [BioC] K-nearest neighbor missing value estimation   John E. Cornell, Ph.D.
• [BioC] K-nearest neighbor missing value estimation   Reiji Teramoto
• [BioC] K-nearest neighbor missing value estimation   Sean Davis
• [BioC] K-nearest neighbor missing value estimation   Xavier Solé
• [BioC] Re: Affy cel file processing - system requirements   Francois Collin
• [BioC] Re: Affy cel file processing - system requirements   James MacDonald
• [BioC] Bioconductor searchable archive   Istvan Albert
• [BioC] Bioconductor searchable archive   Richard Finney
• [BioC] Annotation data packages for Agilent arrays?   David K Pritchard
• [BioC] RNA degradation plots   Harry Hurd
• [BioC] technical replicates   William Kenworthy
• [BioC] Re: RNA deg. Affy 133 chips   cope at ams.jhu.edu
• [BioC] R1.9 and BioC   Phguardiol at aol.com
• [BioC] RNA degradation plots   James MacDonald
• [BioC] R1.9 and BioC   Jeff Gentry
• [BioC] R1.9 and BioC   James MacDonald
• [BioC] Decomposing and recomposing BioConductor data sets   Jarle Snertingdalen
• [BioC] Decomposing and recomposing BioConductor data sets   Robert Gentleman
• [BioC] ReadAffy problem   Dick Beyer
• [BioC] P calls (VSN and RMA)   Isaac Neuhaus
• [BioC] P calls (VSN and RMA)   w.huber at dkfz-heidelberg.de
• [BioC] P calls (VSN and RMA)   w.huber at dkfz-heidelberg.de
• [BioC] P calls (VSN and RMA)   Naomi Altman
• [BioC] Potential reposTools bug (was: simple error)   rkakkar at uchicago.edu
• [BioC] affy package question / bug   Phguardiol at aol.com
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] P calls (VSN and RMA)   Rafael A. Irizarry
• [BioC] Re: Bioconductor Digest, Vol 11, Issue 12   Stephen P. Baker
• [BioC] Re: Bioconductor Digest, Vol 11, Issue 12   Stephen P. Baker
• [BioC] Warning message in installing ROC pkg   Shih-Te Yang
• [BioC] How to load .gpr file into bioconductor?   lhmao at ntu.edu.tw
• [BioC] How to load .gpr file into bioconductor?   James MacDonald
• [BioC] technical replicates   Naomi Altman
• [BioC] "A" mean in lmFit function in limma?   Simon Melov
• [BioC] How to load .gpr file into bioconductor?   w.huber at dkfz-heidelberg.de
• [BioC] How to load .gpr file into bioconductor?   Jean Yee Hwa Yang
• [BioC] 'A' mean in lmFit function in limma?   Gordon K Smyth
• [BioC] mean versus linear model?   Simon Melov
• [BioC] Warning message in installing ROC pkg   Jeff Gentry
• [BioC] mean versus linear model?   Naomi Altman
• [BioC] annaffy installation   Sylvain Pradervand
• [BioC] annaffy installation   Jeff Gentry
• [BioC] P calls (VSN and RMA)   Petra B Ross-MacDonald
• Another question Re: [BioC] question on hgu95 metadata and ontoTools   Elisabetta Manduchi
• [BioC] problem loading simpleaffy library package   Scott Ochsner
• Another question Re: [BioC] question on hgu95 metadata and ontoTools   Elisabetta Manduchi
• [BioC] problem loading simpleaffy library package   Jeff Gentry
• [BioC] spatial correlation and design question   Simon Melov
• [BioC] spatial correlation and design question   Gordon K Smyth
• [BioC] technical replicates   William Kenworthy
• [BioC] affy package bug (?) - no more a problem ?   Phguardiol at aol.com
• [BioC] P calls (VSN and RMA)   w.huber at dkfz-heidelberg.de
• [BioC] P calls (VSN and RMA)   Isaac Neuhaus
• [BioC] P calls (VSN and RMA)   Naomi Altman
• [BioC] technical replicates   Naomi Altman
• Another question Re: [BioC] question on hgu95 metadata and ontoTools   Elisabetta Manduchi
• [BioC] [mArray] scale for spatial plots   Foata,Francis,LAUSANNE,NRC/N&H
• [BioC] affy package bug (?) - no more a problem ?   Jeff Gentry
• Another question Re: [BioC] question on hgu95 metadata and ontoTools   Vincent Carey 525-2265
• Another question Re: [BioC] question on hgu95 metadata and ontoTools   Elisabetta Manduchi
• [BioC] contrast matrix syntax error   Simon Melov
• [BioC] gcrma memory problems in R1.8.1 and R1.9.0-devel   Dick Beyer
• [BioC] related question about computers and bioC   Phguardiol at aol.com
• [BioC] informatic system requirement for microarray analysis   Phguardiol at aol.com
• [BioC] [mArray] scale for spatial plots   Sean Davis
• [BioC] [mArray] scale for spatial plots   Sean Davis
• [BioC] gcrma memory problems in R1.8.1 and R1.9.0-devel   Phguardiol at aol.com
• [BioC] P calls (VSN and RMA)   Petra B Ross-MacDonald
• [BioC] Advice re: HGU133A and HGU133 Plus2.0   Tan, MinHan
• [BioC] contrast matrix syntax error   Gordon Smyth
• [BioC] gcrma on small computers   Phguardiol at aol.com
• [BioC] Looking for list of BioC courses for 2004   neal.f.cariello at gsk.com
• [BioC] gcrma on small computers   Zhijin Wu
• [BioC] Looking for list of BioC courses for 2004   Vincent Carey 525-2265
• [BioC] (no subject)   rkakkar at uchicago.edu
• [BioC] affy use question   J. Mcelwee
• [BioC] Test version of gcrma!   Puhong Gao
• [BioC] limma ebayes   kninh at mdanderson.org
• [BioC] Combine function in matchprobes   Tan, MinHan
• [BioC] limma ebayes   Naomi Altman
• [BioC] Combine function in matchprobes   Robert Gentleman
• [BioC] merging gene lists   Rahul Kakkar M.D.
• [BioC] merging gene lists   Sean Davis
• [BioC] limma ebayes   James MacDonald
• [BioC] limma ebayes   Gordon Smyth
• [BioC] limma ebayes   Gordon Smyth
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Combine function in matchprobes   w.huber at dkfz-heidelberg.de
• [BioC] limma ebayes   James MacDonald
• [BioC] Re: affy use question (J. Mcelwee)   Sylvia Merk
• [BioC] [maNorm] Normalization a complex experiment...   Marcelo Luiz de Laia
• [BioC] [maImage: Draw multiple spatial plots on the SAME graph]   Foata,Francis,LAUSANNE,NRC/N&H
• [BioC] Blurriness assesment of scanner TIFF files   Edo Plantinga
• [BioC] [maImage: Draw multiple spatial plots on the SAME graph]   Sean Davis
• [BioC] [maImage: Draw multiple spatial plots on the SAME grap h]   michael watson (IAH-C)
• [BioC] Blurriness assesment of scanner TIFF files   w.huber at dkfz-heidelberg.de
• [BioC] [maImage: Draw multiple spatial plots on the SAME graph]   Naomi Altman
• [BioC] [maNorm] Normalization a complex experiment...   Gordon Smyth
• [BioC] Blurriness assesment of scanner TIFF files   w.huber at dkfz-heidelberg.de
• [BioC] Problem with marray   Patrice Godard
• [BioC] [maNorm] Normalization a complex experiment...   Marcelo Luiz de Laia
• [BioC] limma and makeContrasts   Stephen Henderson
• [BioC] Re: Blurriness assesment of scanner TIFF files   Simon Lin
• [BioC] [maImage: Draw multiple spatial plots on the SAME grap h]   Naomi Altman
• [BioC] limma: out of bounds error   Straubhaar, Juerg
• [BioC] Trouble installing 'makecdfenv'   Jim Breaux
• [BioC] Proper pooling design   YUK FAI LEUNG
• [BioC] Making a CDF package   yliu at wesleyan.edu
• [BioC] Trouble installing 'makecdfenv'   Robert Gentleman
• [BioC] limma and makeContrasts   Gordon Smyth
• [BioC] Re: Proper Pooling Design   Eric
• [BioC] limma: out of bounds error   Gordon Smyth
• [BioC] [maNorm] Normalization a complex experiment...   Gordon Smyth
• [BioC] Making a CDF package   James MacDonald
• [BioC] RE:proper pooling design   Stephen Moore
• [BioC] rma - intensity distribution over chips   Rani Elkon
• [BioC] vsn and affy   Arne.Muller at aventis.com
• [BioC] vsn and affy   James MacDonald
• [BioC] mt.teststat   Sun, Zhifu
• [BioC] Install Error: File GO_1.4.0.tar.gz   Al Piszcz
• [BioC] error while running RMA   Jeff Lande
• [BioC] rma - intensity distribution over chips   Rafael A. Irizarry
• [BioC] How to output the results in MAANOVA   Lang Chen
• [BioC] Intensity distribution of "significant genes"   Phguardiol at aol.com
• [BioC] Intensity distribution of "significant genes"   Rafael A. Irizarry
• [BioC] Intensity distribution of "significant genes"   Phguardiol at aol.com
• [BioC] Intensity distribution of "significant genes"   Rafael A. Irizarry
• [BioC] Intensity distribution of "significant genes"   Laurent Gautier
• [BioC] Install Error: File GO_1.4.0.tar.gz   Vincent Carey 525-2265
• [BioC] IMAGE PLOTS.   Stephen Nyangoma
• [BioC] Re: metaData   John Zhang
• [BioC] [maNorm] Normalization a complex experiment...   Marcelo Luiz de Laia
• [BioC] How to output the results in MAANOVA   Gordon Smyth
• [BioC] Mu11KsubA and Mu11KsubB   Yen Lin Chia
• [BioC] Problem with marray   Patrice Godard
• [BioC] IMAGE PLOTS.   Laurent Gautier
• [BioC] IMAGE PLOTS.   stephen at iwinet.rug.nl
• [BioC] Help for analysis a Factorial experiment   Marcelo Luiz de Laia
• [BioC] Problem with read.marrayRaw   Joyce Gu
• [BioC] Problem with read.marrayRaw   Jean Yee Hwa Yang
• [BioC] Problem with read.marrayRaw   Joyce Gu
• [BioC] Problem with read.marrayRaw   Jean Yee Hwa Yang
• [BioC] large data set correlations?   Park, Richard
• [BioC] Problem with read.marrayRaw   Joyce Gu
• [BioC] Mu11KsubA and Mu11KsubB   Simon Lin
• [BioC] Problem with read.marrayRaw   Ron Ophir
• [BioC] Dye swap time course experiment in marrayinput   Richard Friedman
• [BioC] limma: no residual degrees of freedom   Straubhaar, Juerg
• [BioC] Limma: four suggestions related to weights and background correction   Ramon Diaz-Uriarte
• [BioC] RE:proper pooling design   YUK FAI LEUNG
• [BioC] RE:proper pooling design   Kenny Ye
• [BioC] Re: Limma: four suggestions related to weights and background correction   Gordon K Smyth
• [BioC] limma: no residual degrees of freedom   Gordon K Smyth
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] A suggestion on the Searchable mail archives   YUK FAI LEUNG
• [BioC] XML and Mac OS X   jtleek at u.washington.edu
• [BioC] a semi-legal question: linking to the BioC mailing list   Ramon Diaz-Uriarte
• [BioC] Re: Bioconductor Digest, Vol 11, Issue 36   Alex F. Bokov
• [BioC] a semi-legal question: linking to the BioC mailing list   Johannes Freudenberg
• [BioC] a semi-legal question: linking to the BioC mailing list   Ramon Diaz-Uriarte
• [BioC] GetBioC misbehavior?   Sean Davis
• [BioC] GetBioC misbehavior?   Robert Gentleman
• [BioC] GetBioC misbehavior?   James MacDonald
• [BioC] Limma:short question   Julia Engelmann
• [BioC] [Fwd: Bioc Book Chapter]   Gordon K Smyth
• [BioC] Limma:short question   James Wettenhall
• [BioC] Limma: setting expression values to NA   Edo Plantinga
• [BioC] p-value difference between R-affy and MAS5   t-kawai at hhc.eisai.co.jp
• [BioC] GetBioC and mirrors   Stefano Volinia
• [BioC] Limma: setting expression values to NA   Sean Davis
• [BioC] Limma:short question   James MacDonald
• [BioC] Limma: setting expression values to NA   James MacDonald
• [BioC] Limma: reading in additional spot data (flags)   Edo Plantinga
• [BioC] a semi-legal question: linking to the BioC mailing lis t   Smith, Brandon
• [BioC] iterative gcrma on 92 slides?   Dick Beyer
• [BioC] iterative gcrma on 92 slides?   Rafael A. Irizarry
• [BioC] iterative gcrma on 92 slides?   Francois Collin
• [BioC] Limma:short question   Wolfgang Huber
• [BioC] Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Bioconductor Digest, Vol 11, Issue 38   Christopher Wilkinson
• [BioC] Limma:short question   Gordon K Smyth
• [BioC] Apologies   Gordon K Smyth
• [BioC] Limma: setting expression values to NA   Gordon K Smyth
• [BioC] Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Biocondu ctor Digest, Vol 11, Issue 38   michael watson (IAH-C)
• [BioC] downloading cdf packages by hand?   Caroline Johnston
• [BioC] Plot function   Joyce Gu
• [BioC] trouble installing "affy" package   Jeffrey Chang
• [BioC] Contrast, help   Marcelo Luiz de Laia
• [BioC] Contrast, help   Sean Davis
• [BioC] Plot function   Jean Yee Hwa Yang
• [BioC] Limma Fit - Error: (subscript) logical subscript too long   Simon Melov
• [BioC] Plot function   Joyce Gu
• [BioC] Plot function   Jean Yee Hwa Yang
• [BioC] M vs A plot   Richard Friedman
• [BioC] Plot function   Joyce Gu
• [BioC] Plot function   Joyce Gu
• [BioC] trouble installing "affy" package   Tom R. Fahland
• [BioC] Re: trouble installing "affy" package   Jeffrey Chang
• [BioC] technical reps vs bio reps in Limma   Simon Melov
• [BioC] bug in limma?   Simon Melov
• [BioC] Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Bioconductor Digest, Vol 11, Issue 40   Chris Wilkinson
• [BioC] bug in limma?   James Wettenhall
• [BioC] M vs A plot   michael watson (IAH-C)
• [BioC] Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Bioconductor Digest, Vol 11, Issue 40   Wolfgang Huber
• [BioC] Re: trouble installing "affy" package   Wolfgang Huber
• [BioC] Normalization with cDNA array   Joyce Gu
• [BioC] bug in limma?   Simon Melov
• [BioC] M vs A plot   Richard Friedman
• [BioC] M vs A plot   Wolfgang Huber
• [BioC] Re: trouble installing "affy" package -- FIX   Jeffrey Chang
• [BioC] rhdf5 fails   Atsuya Fujito
• [BioC] normalize.quantiles generating incorrect output   Jeffrey Chang
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Re: Normalization with cDNA array   Simon Lin

Last message date: Sat Jan 31 21:26:43 MEST 2004
Archived on: Tue Feb 3 15:46:13 MEST 2004

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