[BioC] Recent changes to Bioconductor packages

madman at jimmy.harvard.edu madman at jimmy.harvard.edu
Sat Jan 17 11:00:02 MET 2004


This is an automated message sent out weekly to report recent changes
to Bioconductor packages.  Please see the URL 
http://www.bioconductor.org/changelog.html for a complete history of 
changes.  Unless otherwise noted, these changes apply to the developmental
packages only.
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12 Jan 2003 - affyPLM 1.1.0    BMB
     many major changes including:
     PLMset-class has new attributes: residuals, varcov  
     image() on a PLMset can now plot residuals and possible to add legend bars.     Some major changes in how parameters are passed in some of the C code 
     routines in the fitPLM process 
     conversion function pset2eset() which converts a PLMset to an exprSet
     rmaPLM() function lets you fit the rma model as a PLMset. 
     weights/residuals allow you to index probes from specific probesets



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