[BioC] Limma Fit - Error: (subscript) logical subscript too long

[Simon Melov]

Hi,
we are trying to analyze 52 chips, with 4 treatments in Limma. They 
load up fine, boxplot, etc. Design is ok, but when we run

 > fit <- lmFit(MA, design)
Error: (subscript) logical subscript too long

I'm not sure what this means, and would appreciate any help. Our other 
arrays and analysis works fine in limma, but we havent input this many 
arrays into limma before.

thanks

Simon.
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