[BioC] Heatmap

[Johan Lindberg]

I am trying to plot a matrix of m-values in a heatmap with "average 
linkage". The rows are M-values of genes and the columns are my slides.
I do the following and get the following error message:

 > heatmap(Matrix[,],Rowv=as.dendrogram(gclus),Colv=as.dendrogram(sclus), 
col=rbg)
Error in match.fun(FUN) : evaluation is nested too deeply: infinite recursion?
Error: evaluation is nested too deeply: infinite recursion?
#But this is not the case since I can plot the rows (genes) if I plot them 
without my columns (slides).
plot(sclus, main = paste("Dendrogram: Coph = " , round(coph1columns, 2)))
#This works, why?????????? Strange????
And even more strange, it works if I choose another distance method like 
"single" or "complete" linkage.

I would really appreciate som help :)

/ Johan


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Johan Lindberg
Royal Institute of Technology
AlbaNova University Center
Stockholm Center for Physics, Astronomy and Biotechnology
Department of Molecular Biotechnology
106 91 Stockholm, Sweden

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