[BioC] How to load .gpr file into bioconductor?

[Jean Yee Hwa Yang]

Hi Erik,

Just to add, you can also try

gpTools(raw=TRUE)

from marrayTools package.

Jean

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 Jean Yee Hwa Yang			 jean at biostat.ucsf.edu
 Division of Biostatistics,		   Tel: (415) 476-3368
 University of California,		   Fax: (415) 476-6014
 500 Parnassus Avenue, MU 420-W,  San Francisco, CA 94143-0560
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

On Mon, 12 Jan 2004 w.huber at dkfz-heidelberg.de wrote:

> Hi Erik,
> 
> this is a fairly basic task, and a quick browse with google resulted in at
> least three ways to do it (they are all more or less equivalent)
> 
> the function "read.Genepix" in package marrayInput
> the function "readImageFiles" in the package arrayMagic
> the function "read.maimages" in limma
> 
> Have a look at the respective package vignettes for more details.
> 
> Best wishes
>   Wolfgang
> 
> -------------------------------------
> Wolfgang Huber
> Division of Molecular Genome Analysis
> German Cancer Research Center
> Heidelberg, Germany
> Phone: +49 6221 424709
> Fax:   +49 6221 42524709
> Http:  www.dkfz.de/abt0840/whuber
> -------------------------------------
> 
> On Sun, 11 Jan 2004 lhmao at ntu.edu.tw wrote:
> 
> > Dear friends:
> >   Apologize for a novice asking a basic question. Could somebody please tell me
> > how to load a .gpr or the GenePix result into Bioconductor? Or any place having
> > documents about this answer? I noticed that there is a tutorial document using
> > the demo example-swirl. How could I pack several microarray result files into a
> > package like swirl, or could I load the raw .gpr directly into bioconductor?
> > Thank you for your answer.
> > Sincerely,
> >                                            Erik
> >
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> > Bioconductor at stat.math.ethz.ch
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> >
> 
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