[BioC] contrast matrix syntax error
Simon Melov
smelov at buckinstitute.org
Tue Jan 13 22:38:57 MET 2004
Hi,
I am trying to make some contrasts in limma. I keep getting a syntax
error. My design is read in ok, as well as everything else upto making
a contrast matrix.
design
4day 9day 14day 19day 14daf 19daf 4daf 9daf control
1 -1 0 0 0 0 0 0 0 0
2 -1 0 0 0 0 0 0 0 0
3 -1 0 0 0 0 0 0 0 0
4 -1 0 0 0 0 0 0 0 0
5 0 -1 0 0 0 0 0 0 0
6 0 -1 0 0 0 0 0 0 0
7 0 -1 0 0 0 0 0 0 0
....42 arrays.
contrast.matrix <-
makeContrasts(4day,9day,14day,19day,14daf,19daf,4daf,9daf,control,4day
-19day,levels=design)
Error: syntax error
What am I doing wrong?
thanks
Simon.
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