First quarter 2013 Archives by thread

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Starting: Tue Jan 1 11:17:25 CET 2013
Ending: Sun Mar 31 23:45:31 CEST 2013
Messages: 501

• [R-sig-ME] algal nonlinear mixed effects problem   Reinhold Kliegl
  • [R-sig-ME] algal nonlinear mixed effects problem   Reinhold Kliegl
  • [R-sig-ME] algal nonlinear mixed effects problem   Ben Bolker
    • [R-sig-ME] algal nonlinear mixed effects problem   Reinhold Kliegl
• [R-sig-ME] mixed manova?   Sarah Jamieson
  • [R-sig-ME] mixed manova?   Jarrod Hadfield
• [R-sig-ME] nested mixed model with covariate and missing data   Carlos Gias
  • [R-sig-ME] nested mixed model with covariate and missing data   ONKELINX, Thierry
• [R-sig-ME] linear mixed model with non-monotonic longitudinal data   Brad Buran
• [R-sig-ME] Meta-analysis in MCMCglmm   Matthew Robinson
  • [R-sig-ME] Meta-analysis in MCMCglmm   Jarrod Hadfield
• [R-sig-ME] Error using dredge with an MCMCglmm object   Theoni Photopoulou
  • [R-sig-ME] Error using dredge with an MCMCglmm object   Jarrod Hadfield
  • [R-sig-ME] Error using dredge with an MCMCglmm object   Theoni Photopoulou
• [R-sig-ME] Cholmod warning with glmer   leanne heisler
  • [R-sig-ME] Cholmod warning with glmer   Douglas Bates
  • [R-sig-ME] Cholmod warning with glmer   leanne heisler
  • [R-sig-ME] Cholmod warning with glmer   David Winsemius
    • [R-sig-ME] Cholmod warning with glmer   Ben Bolker
  • [R-sig-ME] Cholmod warning with glmer   leanne heisler
    • [R-sig-ME] Cholmod warning with glmer   Ben Bolker
• [R-sig-ME] stepwise model selection (of fixed effects only) using AIC?   Steve Taylor
  • [R-sig-ME] stepwise model selection (of fixed effects only) using AIC?   Ben Bolker
    • [R-sig-ME] stepwise model selection (of fixed effects only) using AIC?   Steve Taylor
  • [R-sig-ME] stepwise model selection (of fixed effects only) using AIC?   Diego Pujoni
    • [R-sig-ME] stepwise model selection (of fixed effects only) using AIC?   Steve Taylor
      • [R-sig-ME] stepwise model selection (of fixed effects only) using AIC?   Diego Pujoni
      • [R-sig-ME] stepwise model selection (of fixed effects only) using AIC?   Steve Taylor
      • [R-sig-ME] stepwise model selection (of fixed effects only) using AIC?   John Maindonald
      • [R-sig-ME] stepwise model selection (of fixed effects only) using AIC?   Philippi, Tom
• [R-sig-ME] lme4 and r-forge   Federico Calboli
  • [R-sig-ME] lme4 and r-forge   Ben Bolker
• [R-sig-ME] Assigning random effects   Nathan Eustis Rutenbeck
  • [R-sig-ME] Fwd: Assigning random effects   Nathan Eustis Rutenbeck
    • [R-sig-ME] Fwd: Assigning random effects   Seth W. Bigelow
      • [R-sig-ME] Fwd: Assigning random effects   Nathan Eustis Rutenbeck
      • [R-sig-ME] Fwd: Assigning random effects   Seth W. Bigelow
      • [R-sig-ME] Fwd: Assigning random effects   Nathan Eustis Rutenbeck
      • [R-sig-ME] Fwd: Assigning random effects   Emmanuel Curis
      • [R-sig-ME] Fwd: Assigning random effects   chris.brien at iinet.net.au
• [R-sig-ME] weighted vs unweighted GLMER variance estimates   Paulsen, David
• [R-sig-ME] ordinal regression with MCMCglmm   Malcolm Fairbrother
  • [R-sig-ME] ordinal regression with MCMCglmm   Jarrod Hadfield
    • [R-sig-ME] ordinal regression with MCMCglmm   Malcolm Fairbrother
      • [R-sig-ME] ordinal regression with MCMCglmm   Joshua Wiley
      • [R-sig-ME] ordinal regression with MCMCglmm   Jarrod Hadfield
• [R-sig-ME] New book: Beginner's Guide to GAM with R   Highland Statistics Ltd
• [R-sig-ME] Complex random regression structure in ASREML-R   Szymek Drobniak
  • [R-sig-ME] Complex random regression structure in ASREML-R   i white
• [R-sig-ME] mixed effect model with repeated measures in R   Thijs vanden Bergh
  • [R-sig-ME] mixed effect model with repeated measures in R   Billy
    • [R-sig-ME] mixed effect model with repeated measures in R   Thijs vanden Bergh
  • [R-sig-ME] mixed effect model with repeated measures in R   Ned Dochtermann
• [R-sig-ME] profiled deviance components   laurent stephane
• [R-sig-ME] confint() and intervals() do not agree for lmList objects?   Bard, David E. (HSC)
  • [R-sig-ME] confint() and intervals() do not agree for lmList objects?   Ben Bolker
• [R-sig-ME] effects package with glmer function   GIMENEZ ANALIA VERONICA
  • [R-sig-ME] effects package with glmer function   Steve Taylor
    • [R-sig-ME] effects package with glmer function   Ben Bolker
• [R-sig-ME] combining varIdent variance function with mixed effects model   Belinda Burns
  • [R-sig-ME] combining varIdent variance function with mixed effects model   Ben Bolker
• [R-sig-ME] Analysis of unbalanced design data from a before-during-after control-impact study of breeding birds and railway construction   Adriaan De Jong
  • [R-sig-ME] Analysis of unbalanced design data from a before-during-after control-impact study of breeding birds and railway construction   ONKELINX, Thierry
    • [R-sig-ME] Analysis of unbalanced design data from a before-during-after control-impact study of breeding birds and railway construction   Adriaan De Jong
• [R-sig-ME] Course: Introduction to zero inflated models and GLMM   Highland Statistics Ltd
• [R-sig-ME] nlme, self-start, IV bolus   Afshartous, David
• [R-sig-ME] [R] random effects model   arun
• [R-sig-ME] (sin asunto)   GIMENEZ ANALIA VERONICA
• [R-sig-ME] Offset vs fixed factor in a mixed poisson model   v_coudrain at voila.fr
  • [R-sig-ME] Offset vs fixed factor in a mixed poisson model   Ben Bolker
  • [R-sig-ME] Offset vs fixed factor in a mixed poisson model   v_coudrain at voila.fr
  • [R-sig-ME] Offset vs fixed factor in a mixed poisson model   Highland Statistics Ltd
  • [R-sig-ME] Offset vs fixed factor in a mixed poisson model   v_coudrain at voila.fr
    • [R-sig-ME] Offset vs fixed factor in a mixed poisson model   Highland Statistics Ltd
      • [R-sig-ME] Offset vs fixed factor in a mixed poisson model   v_coudrain at voila.fr
      • [R-sig-ME] Offset vs fixed factor in a mixed poisson model   Highland Statistics Ltd
• [R-sig-ME] Not the correct model?   GIMENEZ ANALIA VERONICA
  • [R-sig-ME] Not the correct model?   Seth W. Bigelow
• [R-sig-ME] Data frame size limits in MCMCglmm?   Stuart Luppescu
  • [R-sig-ME] Data frame size limits in MCMCglmm?   Joshua Wiley
    • [R-sig-ME] Data frame size limits in MCMCglmm?   Jarrod Hadfield
      • [R-sig-ME] Data frame size limits in MCMCglmm?   Stuart Luppescu
      • [R-sig-ME] Data frame size limits in MCMCglmm?   Jarrod Hadfield
• [R-sig-ME] Interpretation of the plots   Usha Gurunathan
  • [R-sig-ME] Interpretation of the plots   Baldwin, Jim -FS
• [R-sig-ME] Partialing out the effect of a covariable in a Poisson GLMM   v_coudrain at voila.fr
  • [R-sig-ME] Partialing out the effect of a covariable in a Poisson GLMM   Ben Bolker
  • [R-sig-ME] Partialing out the effect of a covariable in a Poisson GLMM   v_coudrain at voila.fr
    • [R-sig-ME] Partialing out the effect of a covariable in a Poisson GLMM   Ben Bolker
      • [R-sig-ME] Partialing out the effect of a covariable in a Poisson GLMM   v_coudrain at voila.fr
• [R-sig-ME] R-sig-mixed-models Digest, Vol 73, Issue 25   Murray Jorgensen
• [R-sig-ME] Ordered Probit/Logit with random coefficients   Andreas Karpf
  • [R-sig-ME] Ordered Probit/Logit with random coefficients   Vincent Philion
    • [R-sig-ME] Ordered Probit/Logit with random coefficients   Vincent Philion
  • [R-sig-ME] Ordered Probit/Logit with random coefficients   Maciej Swat
  • [R-sig-ME] Ordered Probit/Logit with random coefficients   David Duffy
    • [R-sig-ME] Ordered Probit/Logit with random coefficients   Joshua Wiley
• [R-sig-ME] familial relatedness in MCMCglmm   Laurence O'Dwyer
• [R-sig-ME] r-sig mixed models mailing list response   Ben Bolker
• [R-sig-ME] testing for overdispersion in the mixed effects logistic regression   Antonio P. Ramos
  • [R-sig-ME] testing for overdispersion in the mixed effects logistic regression   Antonio P. Ramos
  • [R-sig-ME] testing for overdispersion in the mixed effects logistic regression   Ben Bolker
• [R-sig-ME] Evaluating the significance of the random effects in GLMM   Gabriela Agostini
  • [R-sig-ME] Evaluating the significance of the random effects in GLMM   Ben Bolker
• [R-sig-ME] multi-trait model in MCMCglmm   Matthew Robinson
  • [R-sig-ME] multi-trait model in MCMCglmm   Jarrod Hadfield
• [R-sig-ME] what about "zero-inflated" predictors (Ben Bolker)   Edwin Lebrija Trejos
• [R-sig-ME] bivariate-response mixed model (MCMCglmm) versus mixed-RMA regression options   Ned Dochtermann
• [R-sig-ME] Comparing two models using anova () (lmer, lme4), get Chisq = 0, Pr(>Chisq) = 1, error or not?   Ron Stone
  • [R-sig-ME] Comparing two models using anova () (lmer, lme4), get Chisq = 0, Pr(>Chisq) = 1, error or not?   Douglas Bates
• [R-sig-ME] GLMM with binomial error and individual-level random term   v_coudrain at voila.fr
  • [R-sig-ME] GLMM with binomial error and individual-level random term   Ben Bolker
  • [R-sig-ME] GLMM with binomial error and individual-level random term   v_coudrain at voila.fr
• [R-sig-ME] model selection process   Gus Jespersen
• [R-sig-ME] non-normal dependent variable   Iasonas Lamprianou
  • [R-sig-ME] non-normal dependent variable   David Duffy
    • [R-sig-ME] non-normal dependent variable   Iasonas Lamprianou
• [R-sig-ME] GLMM with binomial error and individual-level, random term   Highland Statistics Ltd
  • [R-sig-ME] GLMM with binomial error and individual-level, random term   Ben Bolker
• [R-sig-ME] 0   logodall
• [R-sig-ME] Generalized randomized block design   leverkus
  • [R-sig-ME] Generalized randomized block design   leverkus
    • [R-sig-ME] Generalized randomized block design   seth at swbigelow.net
      • [R-sig-ME] Generalized randomized block design   leverkus
      • [R-sig-ME] Generalized randomized block design   seth at swbigelow.net
• [R-sig-ME] Graphing interaction terms in LME4, glmer   Shane Gleason
  • [R-sig-ME] Graphing interaction terms in LME4, glmer   Ista Zahn
    • [R-sig-ME] Graphing interaction terms in LME4, glmer   Shane Gleason
      • [R-sig-ME] Graphing interaction terms in LME4, glmer   Ista Zahn
      • [R-sig-ME] Graphing interaction terms in LME4, glmer   Shane Gleason
• [R-sig-ME] Model selection process and fixed effect reporting with three candidate models   Gus Jespersen
  • [R-sig-ME] Model selection process and fixed effect reporting with three candidate models   seth at swbigelow.net
• [R-sig-ME] Coefplot2 availability? or How to interpret?   Sheryn Olson
  • [R-sig-ME] Coefplot2 availability? or How to interpret?   Ben Bolker
• [R-sig-ME] Help: Error message in nlme   Andrew Close
• [R-sig-ME] follow up test on interaction from mixed effect model   Christopher Kurby
  • [R-sig-ME] follow up test on interaction from mixed effect model   Shane Gleason
  • [R-sig-ME] follow up test on interaction from mixed effect model   Emmanuel Curis
    • [R-sig-ME] follow up test on interaction from mixed effect model   Christopher Kurby
• [R-sig-ME] contribution of random variables to final estimate   Rui Figueira
  • [R-sig-ME] contribution of random variables to final estimate   Alan Haynes
  • [R-sig-ME] contribution of random variables to final estimate   Ben Bolker
• [R-sig-ME] fixing covariances to 0 in MCMCglmm   Celine Teplitsky
  • [R-sig-ME] fixing covariances to 0 in MCMCglmm   Jarrod Hadfield
  • [R-sig-ME] fixing covariances to 0 in MCMCglmm   Pierre B. de Villemereuil
    • [R-sig-ME] fixing covariances to 0 in MCMCglmm   Jarrod Hadfield
      • [R-sig-ME] fixing covariances to 0 in MCMCglmm   Celine Teplitsky
• [R-sig-ME] Standardising means of data   Austin Haffenden
  • [R-sig-ME] Standardising means of data   Neil Collier
• [R-sig-ME] ziPoisson heritability MCMCglmm   Elise Mazé
  • [R-sig-ME] ziPoisson heritability MCMCglmm   Mazé E
• [R-sig-ME] MCMCglmm, priorR and binomial distribution   Camille Madec
  • [R-sig-ME] MCMCglmm, priorR and binomial distribution   Jarrod Hadfield
• [R-sig-ME] GLMM using cplm package in R   Gavin Leighton
• [R-sig-ME] Unbalance design in GLMM   Gabriela Agostini
  • [R-sig-ME] Unbalance design in GLMM   Ben Bolker
• [R-sig-ME] SEs for prediction?   Joshua Wiley
• [R-sig-ME] Standard Errors and Confidence Intervals   Torvon
  • [R-sig-ME] Standard Errors and Confidence Intervals   laurent stephane
• [R-sig-ME] Banff Canada: Mixed modelling course   Highland Statistics Ltd
• [R-sig-ME] interactions in fixed effects   Gabriela Agostini
  • [R-sig-ME] interactions in fixed effects   Joshua Wiley
• [R-sig-ME] lmer - BLUP prediction intervals   Daniel Caro
• [R-sig-ME] [R] lmer - BLUP prediction intervals   Doran, Harold
  • [R-sig-ME] [R] lmer - BLUP prediction intervals   Douglas Bates
    • [R-sig-ME] [R] lmer - BLUP prediction intervals   Andrew Robinson
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Douglas Bates
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Daniel Caro
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Andrew Robinson
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Emmanuel Curis
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Doran, Harold
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Andrew Robinson
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Doran, Harold
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Andrew Robinson
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Douglas Bates
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Doran, Harold
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Emmanuel Curis
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Andrew Robinson
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Jarrod Hadfield
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Jarrod Hadfield
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Daniel Caro
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Jarrod Hadfield
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Daniel Caro
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Jarrod Hadfield
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Douglas Bates
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Andrew Robinson
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Andrew Robinson
      • [R-sig-ME] [R] lmer - BLUP prediction intervals   Douglas Bates
• [R-sig-ME] AIC(c) tables from a set of glmer (lme4) models   Adriaan De Jong
  • [R-sig-ME] AIC(c) tables from a set of glmer (lme4) models   Ben Bolker
• [R-sig-ME] Is there a way to input a covariance matrix (or some similar type of data structure) into lme4 in R?   Tom Harris
• [R-sig-ME] Minimum number of levels for mixed model   nrm2010
  • [R-sig-ME] Minimum number of levels for mixed model   Ben Bolker
  • [R-sig-ME] Minimum number of levels for mixed model   nrm2010
    • [R-sig-ME] Minimum number of levels for mixed model   Ben Bolker
• [R-sig-ME] Modelling zero-inflated count data in nested experiments   Eva Muiruri
• [R-sig-ME] MCMCglmm - ZIP model for mackerel egg data   Gastauer, Sven
  • [R-sig-ME] MCMCglmm - ZIP model for mackerel egg data   Jarrod Hadfield
• [R-sig-ME] Modelling zero-inflated count data in nested, experiments   Highland Statistics Ltd
• [R-sig-ME] Details on specifying random parameters in 3-level HLM with lme   Richard Asturia
  • [R-sig-ME] Details on specifying random parameters in 3-level HLM with lme   Ben Bolker
• [R-sig-ME] Zero inflation on-off in glmmADMB   Adriaan De Jong
  • [R-sig-ME] Zero inflation on-off in glmmADMB   Billy
• [R-sig-ME] nlme, augPred, IV infusion   Afshartous, David
  • [R-sig-ME] nlme, augPred, IV infusion   Afshartous, David
    • [R-sig-ME] nlme, augPred, IV infusion   Afshartous, David
      • [R-sig-ME] nlme, augPred, IV infusion   Afshartous, David
• [R-sig-ME] What is the difference between Matlab Anovan and R mixed Model?   Gordon, Joanne
  • [R-sig-ME] What is the difference between Matlab Anovan and R mixed Model?   Ben Bolker
• [R-sig-ME] Prior structure for fixed and random effects   Theoni Photopoulou
• [R-sig-ME] interpreting random intercepts when no fixed intercept present   John.Morrongiello at csiro.au
  • [R-sig-ME] interpreting random intercepts when no fixed intercept present   Ben Bolker
    • [R-sig-ME] interpreting random intercepts when no fixed intercept?present   Emmanuel Curis
  • [R-sig-ME] interpreting random intercepts when no fixed intercept present   John.Morrongiello at csiro.au
• [R-sig-ME] goodness-of-fit tests on mcmc objects   Andrea Cantieni
• [R-sig-ME] random effect syntax   John.Morrongiello at csiro.au
  • [R-sig-ME] random effect syntax   ONKELINX, Thierry
    • [R-sig-ME] random effect syntax   John.Morrongiello at csiro.au
• [R-sig-ME] Incorrect output when applying lmer within a loop.   Anton Wasson
  • [R-sig-ME] Incorrect output when applying lmer within a loop.   Ben Bolker
• [R-sig-ME] glmmADMB function maximizer failure   Ben Bolker
• [R-sig-ME] Extracting higher level coefficients to replicate Douglas Luke's table   Richard Asturia
  • [R-sig-ME] Extracting higher level coefficients to replicate Douglas Luke's table   Steven J. Pierce
    • [R-sig-ME] Extracting higher level coefficients to replicate Douglas Luke's table   Ben Bolker
• [R-sig-ME] Fitting different error structures with lme()   Cengiz Zopluoğlu
  • [R-sig-ME] Fitting different error structures with lme()   ONKELINX, Thierry
• [R-sig-ME] Error message in Pedigreemm   Napo Vargas
  • [R-sig-ME] Error message in Pedigreemm   David Duffy
    • [R-sig-ME] Error message in Pedigreemm   Napo Vargas
• [R-sig-ME] lmer residual variance estimate with prior weights [SEC=UNCLASSIFIED]   Steve Candy
  • [R-sig-ME] lmer residual variance estimate with prior weights [SEC=UNCLASSIFIED]   Ben Bolker
  • [R-sig-ME] lmer residual variance estimate with prior weights [SEC=UNCLASSIFIED]   Steve Candy
• [R-sig-ME] LME Question   John Michel
  • [R-sig-ME] LME Question   Hugo.Mildenberger at web.de
• [R-sig-ME] Predicted density function from mixed model?   Hugh Morgan
  • [R-sig-ME] Predicted density function from mixed model?   Alan Haynes
    • [R-sig-ME] Predicted density function from mixed model?   Hugh Morgan
      • [R-sig-ME] Fwd: Predicted density function from mixed model?   Alan Haynes
      • [R-sig-ME] Fwd: Predicted density function from mixed model?   Hugh Morgan
      • [R-sig-ME] Fwd: Predicted density function from mixed model?   Alan Haynes
      • [R-sig-ME] Fwd: Predicted density function from mixed model?   Hugh Morgan
• [R-sig-ME] Problem with the categorical predictor in the factor format at level 1   Sunthud Pornprasertmanit
  • [R-sig-ME] Problem with the categorical predictor in the factor format at level 1   Ben Bolker
• [R-sig-ME] variance explained by fixed effects in mixed model   Ellen Pape
  • [R-sig-ME] variance explained by fixed effects in mixed model   Xavier Harrison
    • [R-sig-ME] variance explained by fixed effects in mixed model   Alan Haynes
      • [R-sig-ME] variance explained by fixed effects in mixed model   Ellen Pape
  • [R-sig-ME] variance explained by fixed effects in mixed model   Steven J. Pierce
    • [R-sig-ME] variance explained by fixed effects in mixed model   Ellen Pape
• [R-sig-ME] Different AICs values in lmer and anova   Abdeldjallil
  • [R-sig-ME] Different AICs values in lmer and anova   Ben Bolker
• [R-sig-ME] multiple nested random factors   Amanda Adams
  • [R-sig-ME] multiple nested random factors   Ben Bolker
    • [R-sig-ME] multiple nested random factors   Amanda Adams
      • [R-sig-ME] multiple nested random factors   Ben Bolker
• [R-sig-ME] Francois Maurice   Francois Maurice
• [R-sig-ME] lmer probit fit   Giovanni Mancuso
  • [R-sig-ME] lmer probit fit   Ken Knoblauch
    • [R-sig-ME] lmer probit fit   Ben Bolker
• [R-sig-ME] Varying intercepts vs. varying slopes in MCMCglmm ordinal models   Jonathan Salerno
  • [R-sig-ME] Varying intercepts vs. varying slopes in MCMCglmm ordinal models   Jarrod Hadfield
    • [R-sig-ME] glmer: Downdated X'X is not positive definite   Ross Boylan
    • [R-sig-ME] glmer: Downdated X'X is not positive definite   Ben Bolker
    • [R-sig-ME] glmer: Downdated X'X is not positive definite   Ross Boylan
    • [R-sig-ME] glmer: Downdated X'X is not positive definite   Ross Boylan
    • [R-sig-ME] glmer: Downdated X'X is not positive definite   Ben Bolker
    • [R-sig-ME] glmer: Downdated X'X is not positive definite   Thompson,Paul
    • [R-sig-ME] glmer: Downdated X'X is not positive definite   Ross Boylan
    • [R-sig-ME] glmer: Downdated X'X is not positive definite [related to nAGQ]   Ross Boylan
    • [R-sig-ME] glmer: Downdated X'X is not positive definite [related to nAGQ] fixed?   Ross Boylan
• [R-sig-ME] graphically plotting glmer results with coefplot2   Shane Gleason
  • [R-sig-ME] graphically plotting glmer results with coefplot2   Ben Bolker
• [R-sig-ME] Glmulti, clm, computationally singular system   Liz Hare
  • [R-sig-ME] Glmulti, clm, computationally singular system   Ben Bolker
• [R-sig-ME] lmer update environment: Bug?   James Forester
  • [R-sig-ME] lmer update environment: Bug?   Ben Bolker
• [R-sig-ME] Nested error term and unbalanced design   Erica Newman
  • [R-sig-ME] Nested error term and unbalanced design   Baldwin, Jim -FS
    • [R-sig-ME] Nested error term and unbalanced design   Ben Bolker
      • [R-sig-ME] Nested error term and unbalanced design   Baldwin, Jim -FS
      • [R-sig-ME] Nested error term and unbalanced design   Ben Bolker
• [R-sig-ME] lmer within family mixed model question.   Sai
  • [R-sig-ME] lmer within family mixed model question.   David Duffy
• [R-sig-ME] lmer residual variance estimate with prior weights (lmer wrong, lme and asreml correct) [SEC=UNCLASSIFIED]   Steve Candy
• [R-sig-ME] Extracting model matrices used by lmer   Asaf Weinstein
  • [R-sig-ME] Extracting model matrices used by lmer   Ben Bolker
• [R-sig-ME] GLMM family=binomial, link identity   maggenga at libero.it
  • [R-sig-ME] GLMM family=binomial, link identity   Ben Bolker
• [R-sig-ME] GLMM family=binomial: link identity vs link logit   maggenga at libero.it
• [R-sig-ME] R: Re: GLMM family=binomial, link identity   Ben Bolker
• [R-sig-ME] lme4, error inserting nested structure of fixed factors in glmer   PALACIO BLASCO, SARA
  • [R-sig-ME] lme4, error inserting nested structure of fixed factors in glmer   PALACIO BLASCO, SARA
• [R-sig-ME] Dispersion parameter calculation for Poisson glmer   juwb08 at hampshire.edu
  • [R-sig-ME] Dispersion parameter calculation for Poisson glmer   Ben Bolker
    • [R-sig-ME] Dispersion parameter calculation for Poisson glmer   Douglas Bates
      • [R-sig-ME] Dispersion parameter calculation for Poisson glmer   Rolf Turner
      • [R-sig-ME] Dispersion parameter calculation for Poisson glmer   Ben Bolker
      • [R-sig-ME] Dispersion parameter calculation for Poisson glmer   Rolf Turner
      • [R-sig-ME] Dispersion parameter calculation for Poisson glmer   John Maindonald
      • [R-sig-ME] Dispersion parameter calculation for Poisson glmer   Douglas Bates
      • [R-sig-ME] Dispersion parameter calculation for Poisson glmer   John Maindonald
      • [R-sig-ME] Dispersion parameter calculation for Poisson glmer; PS   John Maindonald
• [R-sig-ME] Trouble getting development version of lme4   Ross Boylan
  • [R-sig-ME] Trouble getting development version of lme4/problem w/CRAN version   Ross Boylan
    • [R-sig-ME] Trouble getting development version of lme4/problem w/CRAN version   Ben Bolker
  • [R-sig-ME] Trouble getting development version of lme4   Ben Bolker
    • [R-sig-ME] Trouble getting development version of lme4   Ross Boylan
• [R-sig-ME] glmmADMB troubles   Ross Boylan
  • [R-sig-ME] glmmADMB troubles   Ben Bolker
    • [R-sig-ME] glmmADMB troubles   Ross Boylan
      • [R-sig-ME] glmmADMB troubles   Ben Bolker
      • [R-sig-ME] glmmADMB troubles   Ross Boylan
      • [R-sig-ME] glmmADMB troubles   Ross Boylan
      • [R-sig-ME] glmmADMB troubles [diagnosed + worked around]   Ross Boylan
• [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   PALACIO BLASCO, SARA
  • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   Hugo.Mildenberger at web.de
    • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   PALACIO BLASCO, SARA
      • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   Douglas Bates
      • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   Henrik Singmann
      • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   Rolf Turner
      • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   Andrew Robinson
      • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   Rolf Turner
      • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   Andrew Robinson
      • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   Emmanuel Curis
      • [R-sig-ME] Nested fixed factors in glmer: Error in mer_finalize(ans) : Downdated X'X is not positive definite, 1.   Rolf Turner
• [R-sig-ME] Partial effects in mixed models   v_coudrain at voila.fr
  • [R-sig-ME] Partial effects in mixed models   Steven J. Pierce
    • [R-sig-ME] Partial effects in mixed models   v_coudrain at voila.fr
      • [R-sig-ME] Partial effects in mixed models   Steven J. Pierce
      • [R-sig-ME] Partial effects in mixed models   Thompson,Paul
      • [R-sig-ME] Partial effects in mixed models   v_coudrain at voila.fr
• [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Chris Howden
  • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Emmanuel Curis
    • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Ben Bolker
    • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Steve Taylor
      • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Chris Howden
      • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   lborger
      • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Chris Howden
      • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Ben Bolker
      • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Chris Howden
      • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Chris Howden
      • [R-sig-ME] Can AIC be approximated by -2ln(L) i.e. the deviance, at very large sample size?   Emmanuel Curis
• [R-sig-ME] R: Re: R: Re: GLMM family=binomial, link identity   maggenga at libero.it
• [R-sig-ME] Nested random effects meta-analysis using nlme?   Masca, Nicholas
  • [R-sig-ME] Nested random effects meta-analysis using nlme?   Shinichi Nakagawa
• [R-sig-ME] False convergence   Nick Isaac
  • [R-sig-ME] False convergence   Ben Bolker
    • [R-sig-ME] False convergence   Nick Isaac
• [R-sig-ME] New book "Generalized Linear Mixed Models" by Walter Stroup   Douglas Bates
• [R-sig-ME] updated sourceforge repository   Ben Bolker
• [R-sig-ME] data grouping and fitting mixed model with lme function   KAYIS Seyit Ali
• [R-sig-ME] new "Generalized Linear Mixed Models" book - #2   Carl Von Ende
• [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   PALACIO BLASCO, SARA
  • [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   Ben Bolker
    • [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   PALACIO BLASCO, SARA
      • [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   Ben Bolker
      • [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   PALACIO BLASCO, SARA
      • [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   Emmanuel Curis
      • [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   PALACIO BLASCO, SARA
      • [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   Emmanuel Curis
      • [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   PALACIO BLASCO, SARA
      • [R-sig-ME] Error en mer_finalize(ans) : Downdated X'X is not positive definite, 1. What is wrong with my model?   PALACIO BLASCO, SARA
• [R-sig-ME] Question about gls R function   Douglas Bates
• [R-sig-ME] Choosing nlme or lme4?   Filipe Carvalho
  • [R-sig-ME] Choosing nlme or lme4?   Ben Bolker
• [R-sig-ME] Changes of estimate sign when interaction effects are highly significant   MORAN LOPEZ, TERESA
  • [R-sig-ME] Changes of estimate sign when interaction effects are highly significant   Adam Smith
    • [R-sig-ME] Changes of estimate sign when interaction effects are highly significant   Ben Bolker
• [R-sig-ME] Is it possible to run MCMCglmm without varying effects?   Jonathan Salerno
  • [R-sig-ME] Is it possible to run MCMCglmm without varying effects?   Jarrod Hadfield
• [R-sig-ME] Finding r^2 value and plotting regression lines and CIs from gls   Margie Mathewson
  • [R-sig-ME] Finding r^2 value and plotting regression lines and CIs from gls   Ben Bolker
• [R-sig-ME] Nested Effects and Correlation   Pantelis H
  • [R-sig-ME] Nested Effects and Correlation   Ben Bolker
    • [R-sig-ME] Nested Effects and Correlation   Ben Bolker
• [R-sig-ME] Comparing linear and ordinal model random effects   Stuart Luppescu
• [R-sig-ME] syntax for partially crossed model   Alexej Siren
• [R-sig-ME] Cluster analysis in the setting of repeated measures   John Sorkin
• [R-sig-ME] Error : "contrasts apply only to factors" in post-hoc analysis afer lmer fitting.   shao chunxuan
  • [R-sig-ME] Error :   Ben Bolker
• [R-sig-ME] lme4 versions   Ross Boylan
  • [R-sig-ME] lme4 versions   Ross Boylan
    • [R-sig-ME] lme4 versions   Ben Bolker
• [R-sig-ME] 2 correlated random effects with quadrature?   Ross Boylan
  • [R-sig-ME] 2 correlated random effects with quadrature?   Ben Bolker
    • [R-sig-ME] 2 correlated random effects with quadrature?   David Duffy
    • [R-sig-ME] 2 correlated random effects with quadrature?   Ross Boylan
  • [R-sig-ME] 2 correlated random effects with quadrature?   Joshua Wiley
• [R-sig-ME] gls error   Benjamin Gillespie
  • [R-sig-ME] gls error   Ben Bolker
• [R-sig-ME] partially crossed model   Alexej Siren
  • [R-sig-ME] partially crossed model   Ben Bolker
• [R-sig-ME] glmmADMB Warning: Estimated covariance matrix may not be positive definite   angela.boag at alumni.ubc.ca
  • [R-sig-ME] glmmADMB Warning: Estimated covariance matrix may not be positive definite   Ben Bolker
• [R-sig-ME] spatial/temporal correlation in gamm with binomial data   Filipe Carvalho
• [R-sig-ME] Can I compare different models - with and without random effects - across different packages?   Antonio P. Ramos
  • [R-sig-ME] Can I compare different models - with and without random effects - across different packages?   Antonio P. Ramos
    • [R-sig-ME] Can I compare different models - with and without random effects - across different packages?   David Duffy
• [R-sig-ME] optimizers for mixed models   Ross Boylan
  • [R-sig-ME] optimizers for mixed models   Ben Bolker
    • [R-sig-ME] optimizers for mixed models   Douglas Bates
    • [R-sig-ME] optimizers for mixed models   Ross Boylan
      • [R-sig-ME] optimizers for mixed models   Ross Boylan
      • [R-sig-ME] optimizers for mixed models   Ben Bolker
      • [R-sig-ME] optimizers for mixed models   Pantelis Hadjipantelis
      • [R-sig-ME] optimizers for mixed models   Ben Bolker
    • [R-sig-ME] optimplus? (was Re: optimizers for mixed models)   Ross Boylan
      • [R-sig-ME] optimplus? (was Re: optimizers for mixed models)   Ben Bolker
• [R-sig-ME] MCMCglmm ordinal: clarification on estimating an intercepts only model and interpreting cutpoints   Jonathan Salerno
  • [R-sig-ME] MCMCglmm ordinal: clarification on estimating an intercepts only model and interpreting cutpoints   Jarrod Hadfield
• [R-sig-ME] How does lmer obtain ML estimates that are not stationary points?   Asaf Weinstein
  • [R-sig-ME] How does lmer obtain ML estimates that are not stationary points?   Ben Bolker
• [R-sig-ME] Evaluating Z matrix   Pantelis Hadjipantelis
  • [R-sig-ME] Evaluating Z matrix   Ben Bolker
    • [R-sig-ME] Evaluating Z matrix   Pantelis Hadjipantelis
• [R-sig-ME] Breeding Values of Parentals (pedigreemm)   Felipe Vargas Reeve
  • [R-sig-ME] Breeding Values of Parentals (pedigreemm)   David Duffy
    • [R-sig-ME] Breeding Values of Parentals (pedigreemm)   Felipe Vargas Reeve
• [R-sig-ME] cAIC   Oliver Soong
  • [R-sig-ME] cAIC   Ben Bolker
• [R-sig-ME] Is a mixed effects appropriate?   Ross Ahmed
  • [R-sig-ME] Is a mixed effects appropriate?   Ben Bolker
• [R-sig-ME] Model selection in GAMM   Mari Laine
  • [R-sig-ME] Model selection in GAMM   Ben Bolker
    • [R-sig-ME] Model selection in GAMM   Andrew Robinson
      • [R-sig-ME] Model selection in GAMM   Ben Bolker
      • [R-sig-ME] Model selection in GAMM   Joshua Wiley
      • [R-sig-ME] Model selection in GAMM   Joshua Wiley
  • [R-sig-ME] Model selection in GAMM   Mari Laine
• [R-sig-ME] semicontinuous variables: what likelihoods are available?   Aurelie Cosandey Godin
  • [R-sig-ME] semicontinuous variables: what likelihoods are available?   Ben Bolker
    • [R-sig-ME] semicontinuous variables: what likelihoods are available?   Aurelie Cosandey Godin
      • [R-sig-ME] semicontinuous variables: what likelihoods are available?   George Wang
      • [R-sig-ME] semicontinuous variables: what likelihoods are available?   Aurelie Cosandey Godin
• [R-sig-ME] predictions for MCMCglmm   Antonio P. Ramos
  • [R-sig-ME] predictions for MCMCglmm   Jarrod Hadfield
    • [R-sig-ME] predictions for MCMCglmm   Antonio P. Ramos
      • [R-sig-ME] predictions for MCMCglmm   Antonio P. Ramos
      • [R-sig-ME] predictions for MCMCglmm   Joshua Wiley
      • [R-sig-ME] predictions for MCMCglmm   Jarrod Hadfield
      • [R-sig-ME] predictions for MCMCglmm   Antonio P. Ramos
      • [R-sig-ME] predictions for MCMCglmm   Jarrod Hadfield
• [R-sig-ME] About glmmADMB Control Options...   MARTINEZ GUTIERREZ, PATRICIA GUADALUPE
• [R-sig-ME] Cholesky factor discrepancy   Pantelis Hadjipantelis
• [R-sig-ME] R2 from mixed models   Alan Haynes
• [R-sig-ME] Random Effect Variance of Zero   Kevin E. Thorpe
  • [R-sig-ME] Random Effect Variance of Zero   Ben Bolker
• [R-sig-ME] profile   KAYIS Seyit Ali
  • [R-sig-ME] profile   Ben Bolker
• [R-sig-ME] Non-convergence error for GLMM with LME4?   Leanna Jones
  • [R-sig-ME] Non-convergence error for GLMM with LME4?   Ben Bolker
• [R-sig-ME] Make a 'between-and-within-factors' ANOVA with lmer function   Vanni Rovera
  • [R-sig-ME] Make a 'between-and-within-factors' ANOVA with lmer function   ian m s white
    • [R-sig-ME] Make a 'between-and-within-factors' ANOVA with lmer function   Ben Bolker
    • [R-sig-ME] Make a 'between-and-within-factors' ANOVA with lmer function   Vanni Rovera
      • [R-sig-ME] Make a 'between-and-within-factors' ANOVA with lmer function   guillaume chaumet
      • [R-sig-ME] Make a 'between-and-within-factors' ANOVA with lmer function   i white
• [R-sig-ME] glmmadmb   Kevin Burls
  • [R-sig-ME] glmmadmb   dave fournier
• [R-sig-ME] lme4 help   Ludovico Frate
• [R-sig-ME] determining whether factor is significant in linear mixed models   Brad Buran
  • [R-sig-ME] determining whether factor is significant in linear mixed models   lborger
    • [R-sig-ME] determining whether factor is significant in linear mixed models   Steven Brady
• [R-sig-ME] complete separation problem lmer   Giovanni Mancuso
  • [R-sig-ME] complete separation problem lmer   Steve Walker
• [R-sig-ME] Request for large data sets for linear mixed models   Douglas Bates
  • [R-sig-ME] Request for large data sets for linear mixed models   Kevin Wright
    • [R-sig-ME] Request for large data sets for linear mixed models   Douglas Bates
• [R-sig-ME] MCMCglmm predictions with fixed effects Splines   Antonio P. Ramos
  • [R-sig-ME] MCMCglmm predictions with fixed effects Splines   Antonio P. Ramos
    • [R-sig-ME] MCMCglmm predictions with fixed effects Splines   Joshua Wiley
    • [R-sig-ME] MCMCglmm predictions with fixed effects Splines   Antonio P. Ramos
      • [R-sig-ME] MCMCglmm predictions with fixed effects Splines   Jarrod Hadfield
      • [R-sig-ME] MCMCglmm predictions with fixed effects Splines   Antonio P. Ramos
      • [R-sig-ME] MCMCglmm predictions with fixed effects Splines   Jarrod Hadfield
      • [R-sig-ME] MCMCglmm predictions with fixed effects Splines   Joshua Wiley
• [R-sig-ME] mixed model negative bionomial   Andrew McFadden (Andy)
  • [R-sig-ME] mixed model negative bionomial   Ben Bolker
    • [R-sig-ME] mixed model negative bionomial   Philippi, Tom
• [R-sig-ME] random effects with covariance matrix depending on a group characteristic   Gabriel Baud-Bovy
• [R-sig-ME] mixed effects model - log likelihood test   Thomas Devlin
• [R-sig-ME] how to impose same variance for two random effects with fixed correlation patterns?   Gabriel Baud-Bovy
• [R-sig-ME] glmmADMB truncated distributions   Ross Boylan
  • [R-sig-ME] glmmADMB truncated distributions   Ben Bolker
• [R-sig-ME] confidence interval for the SD of random effects   Iasonas Lamprianou
• [R-sig-ME] variance of fixed effects   Iasonas Lamprianou
• [R-sig-ME] Is there any way to model nested random effects in MCMCglmm?   Ivain MARTINOSSI--ALLIBERT
  • [R-sig-ME] Is there any way to model nested random effects in MCMCglmm?   Jarrod Hadfield
• [R-sig-ME] adjusting convergence tolerance   Levy, Roger
• [R-sig-ME] MCMCglmm error message - data.frame subscripts   Liz Hare
  • [R-sig-ME] MCMCglmm error message - data.frame subscripts   Jarrod Hadfield
• [R-sig-ME] GAM and MCMCglmm - extracting splines from GAM to use in another package   Antonio P. Ramos
• [R-sig-ME] Help needed: Fitting and Simulating multilevel model in R.   Robin Pritchard
• [R-sig-ME] lme heteroscedasticity   Iasonas Lamprianou
  • [R-sig-ME] lme heteroscedasticity   Joshua Wiley
    • [R-sig-ME] lme heteroscedasticity   Iasonas Lamprianou
• [R-sig-ME] MCMCglmm:interaction bt continuous variable and categorical random effect   john benson
  • [R-sig-ME] MCMCglmm:interaction bt continuous variable and categorical random effect   Joshua Wiley
    • [R-sig-ME] MCMCglmm:interaction bt continuous variable and categorical random effect   john benson
      • [R-sig-ME] MCMCglmm:interaction bt continuous variable and categorical random effect   Joshua Wiley
      • [R-sig-ME] MCMCglmm:interaction bt continuous variable and categorical random effect   john benson

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Archived on: Sun Mar 31 23:46:00 CEST 2013

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