January 2010 Archives by author

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Starting: Fri Jan 1 00:35:30 CET 2010
Ending: Sun Jan 31 23:50:36 CET 2010
Messages: 453

• [BioC] Distinguish Synonymous vs. Non-synonymous SNPs   michael watson (IAH-C)
• [BioC] Align two protein sequences using BLAST   Patrick Aboyoun
• [BioC] BioC Course 27-29 Jan 10: Introduction to R and Bioconductor   Patrick Aboyoun
• [BioC] from TF DNA binding motif to downstream genes?   Patrick Aboyoun
• [BioC] from TF DNA binding motif to downstream genes?   Patrick Aboyoun
• [BioC] from TF DNA binding motif to downstream genes?   Patrick Aboyoun
• [BioC] what is the best way to get scores for matches from matchPWM() ?   Patrick Aboyoun
• [BioC] reducing RangedData   Patrick Aboyoun
• [BioC] stranded findOverlaps   Patrick Aboyoun
• [BioC] Combine two mapped files   Cei Abreu-Goodger
• [BioC] Get genomic sequences   Cei Abreu-Goodger
• [BioC] sorting a list of probe ID's according to length of vectors   Cei Abreu-Goodger
• [BioC] (no subject)   Luz G Alonso
• [BioC] cghMCR package - Jianhua Zhang   Luz G Alonso
• [BioC] Agilent G4112A Arrays   Naomi Altman
• [BioC] HTqPCR and limma and factorial design with no replicates   Naomi Altman
• [BioC] reproducibility between reads?   Naomi Altman
• [BioC] Fwd: Limma - replicate Fold change values - rank product analysis   Neel Aluru
• [BioC] question about RMA normalized gene expression values   James Anderson
• [BioC] question about RMA normalized gene expression values   James Anderson
• [BioC] question about QC and Simpleaffy package   James Anderson
• [BioC] Combine two mapped files   Droit Arnaud
• [BioC] Problems installing Rcurl   Martino Barenco
• [BioC] Problems installing Rcurl   Martino Barenco
• [BioC] running out of memory   Carlos J. Gil Bellosta
• [BioC] running out of memory   Carlos J. Gil Bellosta
• [BioC] running out of memory   Carlos J. Gil Bellosta
• [BioC] Affy CEL file herder info   Henrik Bengtsson
• [BioC] running out of memory   Henrik Bengtsson
• [BioC] unexpected result of rep(Rle(), times=<vector or Rle>)   Charles C. Berry
• [BioC] Help on ROC analysis   Susan Bosco
• [BioC] Help on ROCR analysis   Susan Bosco
• [BioC] Seeking assistance on ROC   Susan Bosco
• [BioC] Seeking assistance on ROC   Susan Bosco
• [BioC] Seeking assistance on ROC   Susan Bosco
• [BioC] Seeking assistance on ROC   Susan Bosco
• [BioC] Another limma factorial that needs controlling and pairing   Karl Brand
• [BioC] Best options for cross validation machine learning   Daniel Brewer
• [BioC] Retrieving gene name where given genomic region is included.   Boel Brynedal
• [BioC] Align two protein sequences using BLAST   Alla Bulashevska
• [BioC] what is the best way to get scores for matches from matchPWM() ?   Lucas Carey
• [BioC] what is the best way to get scores for matches from matchPWM() ?   Lucas Carey
• [BioC] RBGL fails to compile / install   Vincent Carey
• [BioC] save a histogram into file   Vincent Carey
• [BioC] Package on clinical data analysis   Vincent Carey
• [BioC] ggTools Error   Vincent Carey
• [BioC] ggTools Error   Vincent Carey
• [BioC] Retrieving gene name where given genomic region is included.   Vincent Carey
• [BioC] ggTools Error   Vincent Carey
• [BioC] ggTools Error   Vincent Carey
• [BioC] FindOverlaps Problem   Vincent Carey
• [BioC] FindOverlaps Problem   Vincent Carey
• [BioC] Regarding KEGGgraph   Marc Carlson
• [BioC] Drosophila Genome build used for GeneChip Drosophila-2 CDF?   Marc Carlson
• [BioC] vsn and oligo (or xps?) packages for GeneST expression arrays   Benilton Carvalho
• [BioC] How to do RMA without summary to probeset level?   Benilton Carvalho
• [BioC] generate a CDF file from Affymetrix ST array 1.1 library   Benilton Carvalho
• [BioC] WARNING: difference in sorting order depending on computer platform?!?   Benilton Carvalho
• [BioC] GOHyperGResult in a data.frame, possible NAMESPACE problem?   Robert Castelo
• [BioC] GOHyperGResult in a data.frame, possible NAMESPACE problem?   Robert Castelo
• [BioC] GOHyperGResult in a data.frame, possible NAMESPACE problem?   Robert Castelo
• [BioC] stranded findOverlaps   Robert Castelo
• [BioC] function handle in R   Arunava Chakravartty
• [BioC] Agilent 2-color Microarray data analysis tutorial   Chuming Chen
• [BioC] affylmGUI MA-plot using Gene Symbols   Chuming Chen
• [BioC] CNV and NimbleGen Tiling Arrays   Chuming Chen
• [BioC] Agilent G4112A Arrays   Chuming Chen
• [BioC] Agilent G4112A Arrays   Chuming Chen
• [BioC] Agilent G4112A Arrays   Chuming Chen
• [BioC] Agilent G4112A Arrays   Chuming Chen
• [BioC] Agilent G4112A Arrays   Chuming Chen
• [BioC] identifying network communities in a protein-protein interaction graph   Coghlan, Avril
• [BioC] unexpected behaviour of pairwiseAlignment() in Biostrings   Coghlan, Avril
• [BioC] 2 post-doc and one PhD positions at the Bioinformatics and Genomics Department of the Centro de Investigaciones Príncipe Felipe, Valencia, Spain.   Ana Conesa
• [BioC] Which application to start BioConductor?   Kevin R. Coombes
• [BioC] question about RMA normalized gene expression values   Mark Cowley
• [BioC] need output to contain probe x, y coordinates on array - AffyTiling   Charles Danko
• [BioC] bio3d package not installing   Sean Davis
• [BioC] bioconductor.org removed from DNS?   Sean Davis
• [BioC] background correcting an eset from GEO query   Sean Davis
• [BioC] background correcting an eset from GEO query   Sean Davis
• [BioC] dbSNP - getting details of Pubmed ID for a SNP   Sean Davis
• [BioC] Agilent - GO   Sean Davis
• [BioC] Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506   Sean Davis
• [BioC] Agilent - GO   Sean Davis
• [BioC] Reproducibility of DNAcopy segmentation   Sean Davis
• [BioC] methylumi   Sean Davis
• [BioC] lumiR error   Sean Davis
• [BioC] #how to filter bad spots from two color agilent array,   Sean Davis
• [BioC] Seeking assistance on ROC   Sean Davis
• [BioC] Best options for cross validation machine learning   Sean Davis
• [BioC] CNV and NimbleGen Tiling Arrays   Sean Davis
• [BioC] Seeking assistance on ROC   Sean Davis
• [BioC] #how to filter bad spots from two color agilent array,   Sean Davis
• [BioC] GEOmetadb query   Sean Davis
• [BioC] sorting a list of probe ID's according to length of vectors   Sean Davis
• [BioC] Calling genes present or absent in CGH data   Sean Davis
• [BioC] Seeking assistance on ROC   Sean Davis
• [BioC] Seeking assistance on ROC   Sean Davis
• [BioC] Suppress output from getGEO   Sean Davis
• [BioC] Failed installing SJava on MacOS   Michael Dondrup
• [BioC] Failed installing SJava on MacOS   Michael Dondrup
• [BioC] Failed installing SJava on MacOS   Michael Dondrup
• [BioC] Failed installing SJava on MacOS and Linux!   Michael Dondrup
• [BioC] Failed installing SJava on MacOS and Linux!   Michael Dondrup
• [BioC] Failed installing SJava on MacOS   Michael Dondrup
• [BioC] Failed installing SJava on MacOS (success!)   Michael Dondrup
• [BioC] Failed installing SJava on MacOS (success!)   Michael Dondrup
• [BioC] Distinguish Synonymous vs. Non-synonymous SNPs   Michael Dondrup
• [BioC] identifying network communities in a protein-protein interaction graph   Stijn van Dongen
• [BioC] RMySQL loading problem   René Dreos
• [BioC] removing probes from affybatch error   Jenny Drnevich
• [BioC] extracting all GO terms from GOHyperGResult object?   Jenny Drnevich
• [BioC] question about lmFit model   Jenny Drnevich
• [BioC] FW: Problem in masking individual probes to calculate expression values   Jenny Drnevich
• [BioC] WARNING: difference in sorting order depending on computer platform?!?   Jenny Drnevich
• [BioC] GOstats testing using EntrezGene IDs not in chip-specific annotation package?   Jenny Drnevich
• [BioC] problem when try to install GenomicFeatures packages   Changbin Du
• [BioC] lumiR error   Pan Du
• [BioC] lumiR error   Pan Du
• [BioC] background correction within beadarray   Mark Dunning
• [BioC] HTqPCR - how to read data file with multiple samples   Heidi Dvinge
• [BioC] qPCRnorm   Heidi Dvinge
• [BioC] (no subject)   Heidi Dvinge
• [BioC] qPCRnorm   Heidi Dvinge
• [BioC] qPCRnorm   Heidi Dvinge
• [BioC] qPCRnorm   Heidi Dvinge
• [BioC] qPCRnorm   Heidi Dvinge
• [BioC] HTqPCR - how to read data file with multiple samples   Heidi Dvinge
• [BioC] problem with qPCR raw data   Heidi Dvinge
• [BioC] problem with qPCR raw data   Heidi Dvinge
• [BioC] what is meaning of NA in M values   Heidi Dvinge
• [BioC] HTqPCR and factorial design   Heidi Dvinge
• [BioC] HTqPCR and factorial design   Heidi Dvinge
• [BioC] oligo package cannot read files when gdata is loaded   Heidi Dvinge
• [BioC] GOstats testing using EntrezGene IDs not in chip-specific annotation package?   Heidi Dvinge
• [BioC] Extract masked sequences   Mercier Eloi
• [BioC] EBImage installation on Mac OS X 10.6   Milan Esner
• [BioC] SNP/GWAS - snp id to Pubmed ID through dbSNP   Paul Evans
• [BioC] dbSNP - getting details of Pubmed ID for a SNP   Paul Evans
• [BioC] dbSNP - getting details of Pubmed ID for a SNP   Paul Evans
• [BioC] bioconductor.org removed from DNS?   Seth Falcon
• [BioC] Bioconductor webpages are down   Seth Falcon
• [BioC] bioconductor.org removed from DNS? [RESOLVED]   Seth Falcon
• [BioC] RBGL fails to compile / install   Seth Falcon
• [BioC] RMySQL loading problem   Seth Falcon
• [BioC] GOHyperGResult in a data.frame, possible NAMESPACE problem?   Seth Falcon
• [BioC] GOHyperGResult in a data.frame, possible NAMESPACE problem?   Seth Falcon
• [BioC] Problems compiling lumi on Solaris Sparc and R 2.9.0   Seth Falcon
• [BioC] Failed installing SJava on MacOS   Seth Falcon
• [BioC] identifying network communities in a protein-protein interaction graph   Seth Falcon
• [BioC] Failed installing SJava on MacOS (success!)   Seth Falcon
• [BioC] bug in combine   Seth Falcon
• [BioC] bug in combine   Seth Falcon
• [BioC] WARNING: difference in sorting order depending on computer platform?!?   Seth Falcon
• [BioC] Question regarding Installation of annotation package which was built using SQLforge   Seth Falcon
• [BioC] problem with lumiRatAll.db   Flora Fan
• [BioC] problem with lumiRatAll.db   Flora Fan
• [BioC] (no subject)   Leila Farajzadeh
• [BioC] identifying network communities in a protein-protein interaction graph   Gilbert Feng
• [BioC] problem with lumiRatAll.db   Gilbert Feng
• [BioC] R question on symbolic variables   Chris Fenton
• [BioC] compare function in CMA package   Javier Pérez Florido
• [BioC] running out of memory   Javier Pérez Florido
• [BioC] running out of memory   Javier Pérez Florido
• [BioC] running out of memory   Javier Pérez Florido
• [BioC] function handle in R   Javier Pérez Florido
• [BioC] qPCRnorm   Andreia Fonseca
• [BioC] qPCRnorm   Andreia Fonseca
• [BioC] problems : getting error : Error in .checkKeys(value, Lkeys(x), x at ifnotfound) : value for "GO:0010817" not found   Andreia Fonseca
• [BioC] Retrieving gene name where given genomic region is included.   Andreia Fonseca
• [BioC] HTqPCR and factorial design   Andreia Fonseca
• [BioC] HTqPCR and factorial design   Andreia Fonseca
• [BioC] HTqPCR and factorial design   Andreia Fonseca
• [BioC] HTqPCR and limma and factorial design with no replicates   Andreia Fonseca
• [BioC] Agi4x44PreProcess - Filtering Probe Function   BJORN GILL
• [BioC] stranded findOverlaps   Julien Gagneur
• [BioC] topGO results visualisation question   Iain Gallagher
• [BioC] biomaRt error   Iain Gallagher
• [BioC] biomaRt error   Iain Gallagher
• [BioC] biomaRt error   Iain Gallagher
• [BioC] 13 bioinformatics and bioinformatics-related positions   Laurent Gautier
• [BioC] ggTools Error   Paul Geeleher
• [BioC] ggTools Error   Paul Geeleher
• [BioC] R/Bioc workshops at UC Riverside   Thomas Girke
• [BioC] problem with qPCR raw data   Alberto Goldoni
• [BioC] Bioconductor Digest, Vol 83, Issue 4   Lavinia Gordon
• [BioC] Best options for cross validation machine learning   Lavinia Gordon
• [BioC] bioconductor.org removed from DNS?   Groot, Philip de
• [BioC] RBGL fails to compile / install   Groot, Philip de
• [BioC] arrayQualityMetrics Error   Groot, Philip de
• [BioC] Positive correlation between dye-swap technical replicates   Michał Góralski
• [BioC] Positive correlation between dye-swap technical replicates   Michał Góralski
• [BioC] affxparser::readCdfHeader() core dumps   Kasper Daniel Hansen
• [BioC] affxparser::readCdfHeader() core dumps   Kasper Daniel Hansen
• [BioC] Combine two mapped files   Kasper Daniel Hansen
• [BioC] RMySQL loading problem   Kasper Daniel Hansen
• [BioC] problem when try to install GenomicFeatures packages   Kasper Daniel Hansen
• [BioC] Problems installing RCurl   Kasper Daniel Hansen
• [BioC] EBImage installation on Mac OS X 10.6   Kasper Daniel Hansen
• [BioC] from TF DNA binding motif to downstream genes?   Kasper Daniel Hansen
• [BioC] Problems installing Rcurl   Kasper Daniel Hansen
• [BioC] Best options for cross validation machine learning   Kasper Daniel Hansen
• [BioC] ShortRead - readAligned() with bowtie & qual   Kasper Daniel Hansen
• [BioC] bug in combine   Kasper Daniel Hansen
• [BioC] stranded findOverlaps   Kasper Daniel Hansen
• [BioC] bug in combine   Kasper Daniel Hansen
• [BioC] bug in IRanges::disjoin and strange behavior of c   Kasper Daniel Hansen
• [BioC] Job posting (Bioinformatics Analyst)   Christos Hatzis
• [BioC] question about lmFit model   Christos Hatzis
• [BioC] question about lmFit model   Christos Hatzis
• [BioC] Affy CEL file herder info   He, Yiwen (NIH/CIT) [C]
• [BioC] save a histogram into file   Prashantha Hebbar
• [BioC] Agilent G4112A Arrays   Prashantha Hebbar
• [BioC] Agilent G4112A Arrays   Prashantha Hebbar
• [BioC] Agilent G4112A Arrays   Prashantha Hebbar
• [BioC] MA plots + dye swap   Hooiveld, Guido
• [BioC] Regarding KEGGgraph   Wolfgang Huber
• [BioC] Help on ROCR analysis   Wolfgang Huber
• [BioC] Error messages from eBayes()(limma)   Wolfgang Huber
• [BioC] Limma: Three biological repeats, one technical repeat   Wolfgang Huber
• [BioC] Combine affy ExpressionSets   Wolfgang Huber
• [BioC] Agilent G4112A Arrays   Wolfgang Huber
• [BioC] MA plots + dye swap   Wolfgang Huber
• [BioC] WARNING: difference in sorting order depending on computer platform?!?   Wolfgang Huber
• [BioC] reproducibility between reads?   Wolfgang Huber
• [BioC] function handle in R   Wolfgang Huber
• [BioC] Exon array annotation with limma?   Michael Imbeault
• [BioC] bio3d package not installing   Jonathan
• [BioC] bio3d package not installing   Jonathan
• [BioC] Bioconductor webpages are down   Katarina Jørgensen
• [BioC] Bioinformatics Post doc position at UCSF   Audrey Kauffmann
• [BioC] HTqPCR - how to read data file with multiple samples   Adam Kiezun
• [BioC] biomaRt error   Rhoda Kinsella
• [BioC] Changes in siggenes?   Torbjörn Klatt
• [BioC] Statistical Position Supporting Systems Biology   Max Kuhn
• [BioC] Rgraphviz installation: DLL problem?   Gustavo Lacerda
• [BioC] Rgraphviz installation: DLL problem?   Gustavo Lacerda
• [BioC] AnnotationDbi   John Lande
• [BioC] findOveraps suggestions   Michael Lawrence
• [BioC] findOveraps suggestions   Michael Lawrence
• [BioC] stranded findOverlaps   Michael Lawrence
• [BioC] stranded findOverlaps   Michael Lawrence
• [BioC] stranded findOverlaps   Michael Lawrence
• [BioC] bug in IRanges::disjoin and strange behavior of c   Michael Lawrence
• [BioC] FindOverlaps Problem   Michael Lawrence
• [BioC] FindOverlaps Problem   Michael Lawrence
• [BioC] Get genomic sequences   Paul Leo
• [BioC] biomaRt error   Paul Leo
• [BioC] exonmap unexpected results?   Paul Leo
• [BioC] Agilent 2-color Microarray data analysis tutorial   Yong Li
• [BioC] Which application to start BioConductor?   Steve Lianoglou
• [BioC] Retrieving gene name where given genomic region is included.   Steve Lianoglou
• [BioC] running out of memory   Steve Lianoglou
• [BioC] Best options for cross validation machine learning   Steve Lianoglou
• [BioC] Any way to ouput the reordered gene list from heatmap.2()?   Steve Lianoglou
• [BioC] Any way to ouput the reordered gene list from heatmap.2()?   Steve Lianoglou
• [BioC] Failed installing SJava on MacOS (success!)   Steve Lianoglou
• [BioC] stranded findOverlaps   Steve Lianoglou
• [BioC] Error messages from eBayes()(limma)   Juan Lin
• [BioC] Any way to ouput the reordered gene list from heatmap.2()?   Juan Lin
• [BioC] RBGL fails to compile / install   Li Long
• [BioC] troubles with writeTpmap {affxparser} - backconverted BPMAP fails to process   Ann Loraine
• [BioC] Limma with contrasts   James MacDonald
• [BioC] regarding GCRMA normalization   James MacDonald
• [BioC] offline gene name conversion   James W. MacDonald
• [BioC] Which application to start BioConductor?   James W. MacDonald
• [BioC] problem with justGCRMA   James W. MacDonald
• [BioC] Limma with contrasts   James W. MacDonald
• [BioC] problems : getting error : Error in .checkKeys(value, Lkeys(x), x at ifnotfound) : value for "GO:0010817" not found   James W. MacDonald
• [BioC] arrayQualityMetrics Error   James W. MacDonald
• [BioC] cannot install SNPlocs.Hsapiens.dbSNP.20090506   James W. MacDonald
• [BioC] Drosophila Genome build used for GeneChip Drosophila-2 CDF?   James W. MacDonald
• [BioC] Drosophila Genome build used for GeneChip Drosophila-2 CDF?   James W. MacDonald
• [BioC] Positive correlation between dye-swap technical replicates   James W. MacDonald
• [BioC] help needed for GCRMA   James W. MacDonald
• [BioC] affylmGUI .cel loading problem   James W. MacDonald
• [BioC] help needed for GCRMA   James W. MacDonald
• [BioC] Error messages from eBayes()(limma)   James W. MacDonald
• [BioC] running out of memory   James W. MacDonald
• [BioC] question about RMA normalized gene expression values   James W. MacDonald
• [BioC] Regarding GCRMA normalisation   James W. MacDonald
• [BioC] regarding GCRMA   James W. MacDonald
• [BioC] Which application to start BioConductor?   Sergei Manakov
• [BioC] Problems with Affylimma and AffylmGUI   Maxim
• [BioC] Positive correlation between dye-swap technical replicates   Claus Mayer
• [BioC] Package on clinical data analysis   Claus Mayer
• [BioC] MA plots + dye swap   Claus Mayer
• [BioC] help needed for GCRMA   Memon, Farhat N
• [BioC] help needed for GCRMA   Memon, Farhat N
• [BioC] help needed for GCRMA   Memon, Farhat N
• [BioC] FW: Problem in masking individual probes to calculate expression values   Memon, Farhat N
• [BioC] Question about RINGO and follow up analysis   Dr. Viviana Menzel
• [BioC] Which application to start BioConductor?   Saroj K Mohapatra
• [BioC] bioconductor.org removed from DNS?   Brian Moldover
• [BioC] Drosophila Genome build used for GeneChip Drosophila-2 CDF?   Dávid Molnár
• [BioC] Drosophila Genome build used for GeneChip Drosophila-2 CDF?   Dávid Molnár
• [BioC] Drosophila Genome build used for GeneChip Drosophila-2 CDF?   Dávid Molnár
• [BioC] [Bioc-sig-seq] ShortRead internal: too many 'snap' entries   Martin Morgan
• [BioC] RWebServices createMap(): Error in dots[[1L]][[1L]] : subscript out of bounds   Martin Morgan
• [BioC] Combine two mapped files   Martin Morgan
• [BioC] Agilent 2-color Microarray data analysis tutorial   Martin Morgan
• [BioC] Agilent 2-color Microarray data analysis tutorial   Martin Morgan
• [BioC] RWebServices createMap(): Error in dots[[1L]][[1L]] : subscript out of bounds   Martin Morgan
• [BioC] Agilent 2-color Microarray data analysis tutorial   Martin Morgan
• [BioC] Shortread and filtering of duplicate reads   Martin Morgan
• [BioC] Failed installing SJava on MacOS   Martin Morgan
• [BioC] Failed installing SJava on MacOS   Martin Morgan
• [BioC] Failed installing SJava on MacOS   Martin Morgan
• [BioC] Failed installing SJava on MacOS and Linux!   Martin Morgan
• [BioC] Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)   Martin Morgan
• [BioC] Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)   Martin Morgan
• [BioC] 'ArrayExpress' creates invalid AffyBatch objects   Vladimir Morozov
• [BioC] affxparser::readCdfHeader() core dumps   Neelanjan Mukherjee
• [BioC] affxparser::readCdfHeader() core dumps   Neelanjan Mukherjee
• [BioC] Agilent - GO   Marc Noguera
• [BioC] Agilent - GO   Marc Noguera
• [BioC] ShortRead - readAligned() with bowtie & qual   Marc Noguera
• [BioC] Course: Statistical Microarray Analysis Using R & Bioconductor   North, Bernard V
• [BioC] Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506   Hervé Pagès
• [BioC] Reproducibility of DNAcopy segmentation   Ross Patterson
• [BioC] Reproducibility of DNAcopy segmentation   Ross Patterson
• [BioC] EBImage installation on Mac OS X 10.6   Gregoire Pau
• [BioC] agilent reading array data.   Francois Pepin
• [BioC] Agilent G4112A Arrays   Francois Pepin
• [BioC] pcaMethods and categorical NAs   Antoni Picornell
• [BioC] Centos 5.0 R and bioconductor installation   Pierre-Yves
• [BioC] save a histogram into file   Arici Pogonici
• [BioC] Question regarding Installation of annotation package which was built using SQLforge   Suyog Pol
• [BioC] Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)   Suyog Pol
• [BioC] Suppress output from getGEO   Craig P. Pyrame
• [BioC] [R] Suppress output from getGEO   Craig P. Pyrame
• [BioC] [Fwd: Re: [R] Suppress output from getGEO]   Craig P. Pyrame
• [BioC] Suppress output from getGEO   Craig P. Pyrame
• [BioC] obtaining GOID from nuID   Md.Mamunur Rashid
• [BioC] vsn and oligo (or xps?) packages for GeneST expression arrays   Tim Rayner
• [BioC] extracting all GO terms from GOHyperGResult object?   James F. Reid
• [BioC] Problems installing RCurl   Cristobal Fresno Rodríguez
• [BioC] Problems installing Rcurl   Cristobal Fresno Rodríguez
• [BioC] Problems installing Rcurl   Cristobal Fresno Rodríguez
• [BioC] Failed installing SJava on MacOS and Linux!   Cristobal Fresno Rodríguez
• [BioC] Centos 5.0 R and bioconductor installation   Anguraj Sadanandam
• [BioC] DNAcopy   Anguraj Sadanandam
• [BioC] methylumi   Paul Sanfilippo
• [BioC] methylumi   Paul Sanfilippo
• [BioC] lumiR error   Paul Sanfilippo
• [BioC] lumiR error   Paul Sanfilippo
• [BioC] lumiR error   Paul Sanfilippo
• [BioC] lumiR error   Paul Sanfilippo
• [BioC] Changes in siggenes?   Holger Schwender
• [BioC] from TF DNA binding motif to downstream genes?   Paul Shannon
• [BioC] from TF DNA binding motif to downstream genes?   Paul Shannon
• [BioC] reproducibility between reads?   Pete Shepard
• [BioC] problems when using "readCcg" in "affxparser" to parse .CNCHP file   Shi, Tao
• [BioC] problems when using "readCcg" in "affxparser" to parse .CNCHP file   Shi, Tao
• [BioC] RWebServices createMap(): Error in dots[[1L]][[1L]] : subscript out of bounds   Michael Shipway
• [BioC] RWebServices createMap(): Error in dots[[1L]][[1L]] : subscript out of bounds   Michael Shipway
• [BioC] RWebServices createMap(): Error in dots[[1L]][[1L]] : subscript out of bounds   Michael Shipway
• [BioC] CNV analysis with cghMCR/CNTools   Tim Smith
• [BioC] Packages to query/process TCGA data?   Tim Smith
• [BioC] affyBatch: probes from intensity table not listed in the output of indexProbes()   Mikhail Spivakov
• [BioC] Problems installing RCurl   Sunny Srivastava
• [BioC] Problems installing RCurl   Sunny Srivastava
• [BioC] Problems installing Rcurl   Sunny Srivastava
• [BioC] question about lmFit model   Sunny Srivastava
• [BioC] question about lmFit model   Sunny Srivastava
• [BioC] duplicates, technical and biological replicates + dividing a microarray into two parts   Staninska, Ana, Dr.
• [BioC] Positive correlation between dye-swap technical replicates   Juan Pedro Steibel
• [BioC] cannot install SNPlocs.Hsapiens.dbSNP.20090506   Dan Strumpf
• [BioC] Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506   Dan Strumpf
• [BioC] Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506   Dan Strumpf
• [BioC] ShortRead internal: too many 'snap' entries   Ramzi TEMANNI
• [BioC] [Bioc-sig-seq] ShortRead internal: too many 'snap' entries   Ramzi TEMANNI
• [BioC] arrayQualityMetrics Error   Ramzi TEMANNI
• [BioC] arrayQualityMetrics Error   Ramzi TEMANNI
• [BioC] generate a CDF file from Affymetrix ST array 1.1 library   Ramzi TEMANNI
• [BioC] offline gene name conversion   Rainer Tischler
• [BioC] R question on symbolic variables   Joern Toedling
• [BioC] Best options for cross validation machine learning   Joern Toedling
• [BioC] Question about RINGO and follow up analysis   Joern Toedling
• [BioC] affylmGUI .cel loading problem   Christine Tomlins
• [BioC] Is only 2/3 of the Human Gene ST 1.0 probesets associated to a useful annotation ?   Nizar Touleimat
• [BioC] Combine affy ExpressionSets   Unger, Kristian
• [BioC] question about RMA normalized gene expression values   Bjoern Usadel
• [BioC] Bioconductor Digest, Vol 83, Issue 23   M. Carmen Ruiz de Villa
• [BioC] Get genomic sequences   Johannes Waage
• [BioC] Get genomic sequences   Johannes Waage
• [BioC] Shortread and filtering of duplicate reads   Johannes Waage
• [BioC] Single Cell Gene Expression Normalization   Min Wang
• [BioC] bootstrapping microarray data   Lee William
• [BioC] Limma with contrasts   Matthew Willmann
• [BioC] Limma with contrasts   Matthew Willmann
• [BioC] Limma with contrasts   Matthew Willmann
• [BioC] problem when try to install GenomicFeatures packages   Chao-Jen Wong
• [BioC] Problems installing RCurl   Chao-Jen Wong
• [BioC] Any way to ouput the reordered gene list from heatmap.2()?   Di Wu
• [BioC] Distinguish Synonymous vs. Non-synonymous SNPs   Wu, Xiwei
• [BioC] Distinguish Synonymous vs. Non-synonymous SNPs   Wu, Xiwei
• [BioC] FindOverlaps Problem   Wu, Xiwei
• [BioC] FindOverlaps Problem   Wu, Xiwei
• [BioC] FindOverlaps Problem   Wu, Xiwei
• [BioC] regarding GCRMA normalization   Zhijin Wu
• [BioC] sorting a list of probe ID's according to length of vectors   Assa Yeroslaviz
• [BioC] reducing RangedData   Janet Young
• [BioC] findOveraps suggestions   Janet Young
• [BioC] findOveraps suggestions   Janet Young
• [BioC] findOveraps suggestions   Janet Young
• [BioC] Regarding KEGGgraph   Jitao David Zhang
• [BioC] Regarding KEGGgraph   Jitao David Zhang
• [BioC] Is color.pathway.by.objects (KEGGSOAP) working?   John Zhang
• [BioC] (no subject)   John Zhang
• [BioC] Calling genes present or absent in CGH data   John Zhang
• [BioC] CNV analysis with cghMCR/CNTools   John Zhang
• [BioC] GEOmetadb query   Jack Zhu
• [BioC] ChIPpeakAnnot -names field requried   Julie Zhu
• [BioC] R question on symbolic variables   axel.klenk at actelion.com
• [BioC] Calling genes present or absent in CGH data   adam_pgsql
• [BioC] vsn and oligo (or xps?) packages for GeneST expression arrays   cstrato
• [BioC] problems when using "readCcg" in "affxparser" to parse .CNCHP file   cstrato
• [BioC] problems when using "readCcg" in "affxparser" to parse .CNCHP file   cstrato
• [BioC] GEOmetadb query   BorisZybailov at gmail.com
• [BioC] Limma: Three biological repeats, one technical repeat   aculeata at gmail.com
• [BioC] background correction within beadarray   gblackshields at gmail.com
• [BioC] Which application to start BioConductor?   cihan inan
• [BioC] Which application to start BioConductor?   cihan inan
• [BioC] Which application to start BioConductor?   cihan inan
• [BioC] globaltest 5.0.2   J.J.Goeman at lumc.nl
• [BioC] Package on clinical data analysis   David martin
• [BioC] Package on clinical data analysis   David martin
• [BioC] Problems compiling lumi on Solaris Sparc and R 2.9.0   ngrundma
• [BioC] Problems compiling lumi on Solaris Sparc and R 2.9.0   ngrundma
• [BioC] Regarding GCRMA normalisation   sneha patil
• [BioC] Regardin GCRMA normalization   sneha patil
• [BioC] regarding GCRMA normalization   sneha patil
• [BioC] regarding GCRMA normalization   sneha patil
• [BioC] Fwd: regarding GCRMA normalization   sneha patil
• [BioC] regarding GCRMA   sneha patil
• [BioC] #how to filter bad spots from two color agilent array,   neeraj rana
• [BioC] what is meaning of NA in M values   neeraj rana
• [BioC] affylmGUI .cel loading problem   rcaloger
• [BioC] which is the appropriate way to use lmFit in my case?   sabrina s
• [BioC] question about lmFit model   sabrina s
• [BioC] question about lmFit model   sabrina s
• [BioC] question about lmFit model   sabrina s
• [BioC] question about lmFit model   sabrina s
• [BioC] Regarding KEGGgraph   anupam sinha
• [BioC] Regarding KEGGgraph   anupam sinha
• [BioC] Regarding KEGGgraph   anupam sinha
• [BioC] Agilent G4112A Arrays   francois at sus.mcgill.ca
• [BioC] stranded findOverlaps   Michael.Dondrup at uni.no
• [BioC] limma: Help with time course experiment, common ref design   n.taris at voila.fr
• [BioC] problem with justGCRMA   Brian_Hare at vrtx.com
• [BioC] background correcting an eset from GEO query   jeremy wilson

Last message date: Sun Jan 31 23:50:36 CET 2010
Archived on: Mon Feb 1 19:12:58 CET 2010

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