[BioC] identifying network communities in a protein-protein interaction graph

[Seth Falcon]

On 1/18/10 9:10 AM, Coghlan, Avril wrote:
> I am wondering is there any function available in Bioconductor or other
> R libraries for detecting network communities in protein-protein
> interaction graphs (where a "network community" is defined as a part of
> a network that has more internal connections than to the rest of the
> network)?

You might find relevant packages using these listings:

http://bioconductor.org/packages/2.5/GraphsAndNetworks.html
http://bioconductor.org/packages/2.5/Proteomics.html

In particular, perhaps ppiStats has something of interest to you.

+ seth

-- 
Seth Falcon
Bioconductor Core Team | FHCRC