[BioC] RMySQL loading problem

[Kasper Daniel Hansen]

On Jan 8, 2010, at 12:33 PM, Seth Falcon wrote:

> Hi René,
> 
> This is not a Bioconductor related problem.  Perhaps you should ask on r-sig-db or r-sig-mac?
> 
> How have you installed MySQL on your system?

Or perhaps more relevant: it seems to be looking for a 64bit version of MySQL since you seem to be using a 64bit version of R

> Also, you are using an out of date version of R and Bioconductor packages.  You might also consider upgrading.
> 
> + seth
> 
> On 1/7/10 10:06 AM, René Dreos wrote:
>> Dear Bioconductor mailing list,
>> 
>> I am runing R 2.9 and I am having some problems loading RMySQL library:
>> 
>>> library(RMySQL)
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>   unable to load shared library
>> '/Library/Frameworks/R.framework/Resources/library/RMySQL/libs/x86_64/RMySQL.so':
>> 
>> dlopen(/Library/Frameworks/R.framework/Resources/library/RMySQL/libs/x86_64/RMySQL.so,
>> 6): Symbol not found: _mysql_affected_rows
>>   Referenced from:
>> /Library/Frameworks/R.framework/Resources/library/RMySQL/libs/x86_64/RMySQL.so
>>   Expected in: dynamic lookup
>> 
>> Error : .onLoad failed in 'loadNamespace' for 'RMySQL'
>> Error: package/namespace load failed for 'RMySQL'
>>> sessionInfo()
>> R version 2.9.2 (2009-08-24)
>> x86_64-apple-darwin9.8.0
>> 
>> locale:
>> C
>> 
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>> 
>> other attached packages:
>>  [1] DBI_0.2-4                 RColorBrewer_1.0-2
>>  [3] arrayQualityMetrics_2.2.3 affyPLM_1.20.0
>>  [5] annotate_1.22.0           simpleaffy_2.20.0
>>  [7] gcrma_2.16.0              genefilter_1.24.2
>>  [9] bradiar1b520742cdf_1.22.0 preprocessCore_1.6.0
>> [11] affxparser_1.16.0         makecdfenv_1.22.0
>> [13] affyio_1.12.0             limma_2.18.3
>> [15] affy_1.22.1               matchprobes_1.16.0
>> [17] Biostrings_2.12.9         IRanges_1.2.3
>> [19] AnnotationDbi_1.6.1       Biobase_2.4.1
>> 
>> loaded via a namespace (and not attached):
>>  [1] RSQLite_0.7-2      beadarray_1.12.1   grid_2.9.2
>> hwriter_1.1
>>  [5] lattice_0.17-25    latticeExtra_0.6-4 marray_1.22.0
>> splines_2.9.2
>>  [9] stats4_2.9.2       survival_2.35-4    tools_2.9.2
>> vsn_3.12.0
>> [13] xtable_1.5-5
>> 
>> Has someone else got the same problem? How can I solve it?
>> 
>> Thank you very much indeed,
>> best
>> r
>> 
>> 	[[alternative HTML version deleted]]
>> 
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> 
> 
> -- 
> Seth Falcon
> Bioconductor Core Team | FHCRC
> 
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