[BioC] lumiR error
Paul Sanfilippo
prseye at gmail.com
Sun Jan 17 00:16:41 CET 2010
Dear List,
I'm new to microarray analysis, so go easy. When I try to import some
methylation data using lumiR, I receive the following error:
> meth<-lumiR("~/desktop/meth_sample.txt")
Error in gregexpr("\t", dataLine1) : invalid 'text' argument
If I specify "sep":
> meth<-lumiR("~/desktop/meth_sample.txt",sep="\t")
Error in strsplit(info[nMetaDataLines + 2], sep)[[1]] :
subscript out of bounds
Does anyone know what might be causing the problem? Can lumiR handle
this type of data where headers from BeadStudio are "..._Beta" instead
of "..._Signal", etc
Thank you,
Paul Sanfilippo
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