[BioC] reproducibility between reads?

[Naomi Altman]

cor(log(count.sample1+.25),log(count.sample2+.25)) works pretty well.

--Naomi

At 05:57 PM 1/29/2010, Pete Shepard wrote:
>Dear List,
>
>I am attempting to measure the reproducibility of two biological replicate
>RNA seq Solexa reads. Are there any Bioconductor packages that can handle
>this?
>
>TIA
>
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Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
University Park, PA 16802-2111