[BioC] cannot install SNPlocs.Hsapiens.dbSNP.20090506

Dan Strumpf dstrumpf at uhnresearch.ca
Mon Jan 11 16:23:12 CET 2010


Hi,
received these messagages when trying to install

SNPlocs.Hsapiens.dbSNP.20090506

Any tips?

Thanks,

Dan

 > source("http://bioconductor.org/biocLite.R")
Warning messages:
1: In safeSource() : Redefining ‘biocinstall’
2: In safeSource() : Redefining ‘biocinstallPkgGroups’
3: In safeSource() : Redefining ‘biocinstallRepos’
 > biocLite("SNPlocs.Hsapiens.dbSNP.20090506")
Using R version 2.10.0, biocinstall version 2.5.10.
Installing Bioconductor version 2.5 packages:
[1] "SNPlocs.Hsapiens.dbSNP.20090506"
Please wait...

Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
   package ‘SNPlocs.Hsapiens.dbSNP.20090506’ is not available

 > sessionInfo()
R version 2.10.0 (2009-10-26)
i386-pc-mingw32

locale:
[1] LC_COLLATE=English_Canada.1252  LC_CTYPE=English_Canada.1252 
LC_MONETARY=English_Canada.1252 LC_NUMERIC=C
[5] LC_TIME=English_Canada.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BSgenome_1.14.2     Biostrings_2.14.10  IRanges_1.4.9 
org.Hs.eg.db_2.3.6  RSQLite_0.8-1       DBI_0.2-5 
AnnotationDbi_1.8.0
[8] Biobase_2.6.0

loaded via a namespace (and not attached):
[1] tools_2.10.0



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