[BioC] findOveraps suggestions

[Janet Young]

Excellent.  I think ignoreRedundant makes sense.

thanks!

On Jan 21, 2010, at 4:25 PM, Michael Lawrence wrote:

>
>
> On Thu, Jan 21, 2010 at 3:04 PM, Janet Young <jayoung at fhcrc.org>  
> wrote:
> Thanks Michael,
>
>
> On Jan 21, 2010, at 1:49 PM, Michael Lawrence wrote:
>
> So, we could go ahead and add that option.
> that would be great - thank you.
>
>
> Not sure "simplify" would be a good word. Or would we want two  
> separate options, one to remove the obvious self hits and another to  
> remove the redundant hits?
>
> I think keeping the two options separate is probably better?
>
>
> Maybe 'ignoreSelf' and then "normalize" or something? Suggestions  
> welcome.
>
> good - I think ignoreSelf is very clear (and you're right, simplify  
> isn't so good).  "normalize" makes me think of other things - maybe  
> not so good. "ignoreSymmetric" perhaps? (only makes sense if  
> query=subject - perhaps there could be a check for that if user  
> tries to invoke that option?)
>
>
> I don't know about ignoreSymmetric, since we're only ignoring the  
> redundancy, not the matching itself. Maybe ignoreRedundant?
>
> Also, these parameters will only be for the method where the subject  
> is missing, so we do not have to do any special checks.
>
> Michael
> Janet
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>