[BioC] problem when try to install GenomicFeatures packages

[Changbin Du]

HI, Dear,

I am a biginner of BIOconductor. When I try to install the 
GenomicFeatures package, I failed two times. Here is the code in R under 
Linux:

 > biocLite("GenomicFeatures.Hsapiens.UCSC.hg18")
Using R version 2.10.1, biocinstall version 2.5.10.
Installing Bioconductor version 2.5 packages:
[1] "GenomicFeatures.Hsapiens.UCSC.hg18"
Please wait...

also installing the dependencies ‘RCurl’, ‘rtracklayer’, ‘GenomicFeatures’

trying URL 'http://cran.fhcrc.org/src/contrib/RCurl_1.3-1.tar.gz'
Content type 'application/x-gzip' length 800529 bytes (781 Kb)
opened URL
==================================================
downloaded 781 Kb

trying URL 
'http://www.bioconductor.org/packages/2.5/bioc/src/contrib/rtracklayer_1.6.0.tar.gz'
Content type 'application/x-gzip' length 1363174 bytes (1.3 Mb)
opened URL
==================================================
downloaded 1.3 Mb

trying URL 
'http://www.bioconductor.org/packages/2.5/bioc/src/contrib/GenomicFeatures_0.2.0.tar.gz'
Content type 'application/x-gzip' length 70108 bytes (68 Kb)
opened URL
==================================================
downloaded 68 Kb

trying URL 
'http://www.bioconductor.org/packages/2.5/data/experiment/src/contrib/GenomicFeatures.Hsapiens.UCSC.hg18_0.1.1.tar.gz'
Content type 'application/x-gzip' length 19774391 bytes (18.9 Mb)
opened URL
==================================================
downloaded 18.9 Mb

* installing *source* package ‘RCurl’ ...
checking for curl-config... no
Cannot find curl-config
ERROR: configuration failed for package ‘RCurl’
* removing ‘/home/cdu/library/RCurl’
* installing *source* package ‘rtracklayer’ ...
** R
** data
** demo
** inst
** preparing package for lazy loading
Warning in library(pkg, character.only = TRUE, logical.return = TRUE, 
lib.loc = lib.loc) :
there is no package called 'RCurl'
Error : package 'RCurl' could not be loaded
ERROR: lazy loading failed for package ‘rtracklayer’
* removing ‘/home/cdu/library/rtracklayer’
* installing *source* package ‘GenomicFeatures’ ...
** R
** inst
** preparing package for lazy loading
Warning in library(pkg, character.only = TRUE, logical.return = TRUE, 
lib.loc = lib.loc) :
there is no package called 'rtracklayer'
Error : package 'rtracklayer' could not be loaded
ERROR: lazy loading failed for package ‘GenomicFeatures’
* removing ‘/home/cdu/library/GenomicFeatures’
* installing *source* package ‘GenomicFeatures.Hsapiens.UCSC.hg18’ ...
** R
** inst
** preparing package for lazy loading
Error : package 'GenomicFeatures' required by 
'GenomicFeatures.Hsapiens.UCSC.hg18' could not be found
ERROR: lazy loading failed for package ‘GenomicFeatures.Hsapiens.UCSC.hg18’
* removing ‘/home/cdu/library/GenomicFeatures.Hsapiens.UCSC.hg18’

The downloaded packages are in
‘/tmp/Rtmp26fOPJ/downloaded_packages’
Updating HTML index of packages in '.Library'
Warning messages:
1: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'RCurl' had non-zero exit status
2: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'rtracklayer' had non-zero exit status
3: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'GenomicFeatures' had non-zero exit status
4: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'GenomicFeatures.Hsapiens.UCSC.hg18' had 
non-zero exit status

Can you help me with this?

Thanks!


-- 
Sincerely,
Changbin 
--

Changbin Du
DOE Joint Genome Institute
Bldg 400 Rm 457
2800 Mitchell Dr,  Walnut Creet, CA 94598
Phone: 925-927-2856
Fax: 925-296-5850