[BioC] Agilent 2-color Microarray data analysis tutorial

Martin Morgan mtmorgan at fhcrc.org
Wed Jan 13 17:55:28 CET 2010


Hi Chuming --

Chuming Chen wrote:
> Dear All,
> 
> Can anybody point a tutorial on Agilent 2-color Microarray data analysis
> including pre-processing, statistical analyses, Gene set enrichment
> analysis, Clustering and visualization etc.?

The limma vignette is a very useful general purpose starting point,

  http://bioconductor.org/packages/2.5/bioc/html/limma.html

as are the workshop resources related to microarray analysis

  http://bioconductor.org/workshops/

and common workflows

  http://bioconductor.org/docs/workflows/index.html

Martin

> 
> Thanks,
> 
> Chuming
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor


-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793



More information about the Bioconductor mailing list