[BioC] Agilent 2-color Microarray data analysis tutorial

[Martin Morgan]

Hi Chuming --

Chuming Chen wrote:
> Dear All,
> 
> Can anybody point a tutorial on Agilent 2-color Microarray data analysis
> including pre-processing, statistical analyses, Gene set enrichment
> analysis, Clustering and visualization etc.?

The limma vignette is a very useful general purpose starting point,

  http://bioconductor.org/packages/2.5/bioc/html/limma.html

as are the workshop resources related to microarray analysis

  http://bioconductor.org/workshops/

and common workflows

  http://bioconductor.org/docs/workflows/index.html

Martin

> 
> Thanks,
> 
> Chuming
> 
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
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