April 2010 Archives by date

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Starting: Thu Apr 1 00:07:32 CEST 2010
Ending: Fri Apr 30 23:09:24 CEST 2010
Messages: 562

• [BioC] GEOquery   Zhu, Julie
• [BioC] GEOquery   Zhu, Julie
• [BioC] GEOquery   Sean Davis
• [BioC] Error in getCdfInfo(object)   Arun A K
• [BioC] smlSet   claire pujoll
• [BioC] smlSet   Vincent Carey
• [BioC] smlSet   Vincent Carey
• [BioC] smlSet   claire pujoll
• [BioC] Fwd: regarding installaion of cdf package   sneha patil
• [BioC] reading cell files   sneha patil
• [BioC] Get gene expression data by averaging probes corresponding to the gene?   697820169
• [BioC] question regarding qc function in simpleaffy package   Groot, Philip de
• [BioC] Get gene expression data by averaging probes corresponding to the gene?   Sean Davis
• [BioC] reading cell files   Sean Davis
• [BioC] Fwd: regarding installaion of cdf package   Sean Davis
• [BioC] Time-course microarray tutorial   Colin Gillespie
• [BioC] GEOquery   Zhu, Julie
• [BioC] GEOquery   Sean Davis
• [BioC] how to find the probe set ID using different CDF file?   James Anderson
• [BioC] 'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code   Radek Blatny
• [BioC] RIP-Chip training   Blalock, Eric M
• [BioC] Using RMA normalization on 3 microarray replicates - valid?   Kaitlin Louise Bergfield
• [BioC] Using RMA normalization on 3 microarray replicates - valid?   Steve Lianoglou
• [BioC] Course***R Advanced Programming April 2010***R Courses*** by XLSolutions Corp Seattle, San Francisco, Salt Lake City   sue at xlsolutions-corp.com
• [BioC] Get gene expression data by averaging probes corresponding to the gene?   Gordon K Smyth
• [BioC] Biostrings C interface :: example not compiling   Erik Wright
• [BioC] Limma design matrix for time course experiment   Suresh, Uthra
• [BioC] VSN: minimum number of controls?   Eric E. Snyder
• [BioC] Using RMA normalization on 3 microarray replicates - valid?   James MacDonald
• [BioC] Query regarding Bioconductor package   varpal singh
• [BioC] Biostrings C interface :: example not compiling   Erik Wright
• [BioC] Biostrings C interface :: example not compiling   Charles C. Berry
• [BioC] VSN: minimum number of controls?   Martin Morgan
• [BioC] Embedding R output in Word   Chintanu
• [BioC] Limma design matrix for time course experiment   Gordon K Smyth
• [BioC] VSN: minimum number of controls?   Eric E. Snyder
• [BioC] VSN: minimum number of controls?   Martin Morgan
• [BioC] normalization   Yisong Zhen
• [BioC] Imitating Affy's own steps   Timothy Wu
• [BioC] [MAANOVA] Contrasts for interaction levels - possible?   Maciej Jończyk
• [BioC] Specifying a local CDF file for use with fitPLM or others   Vincent Davis
• [BioC] Embedding R output in Word   Sean Davis
• [BioC] Error with read.maimages   lapereir at uc.cl
• [BioC] Error with read.maimages   Vincent Carey
• [BioC] Embedding R output in Word   Chintanu
• [BioC] Biostrings C interface :: example not compiling   Hervé Pagès
• [BioC] stuck with affy/ limma   Maxim
• [BioC] Biostrings C interface :: example not compiling   Erik Wright
• [BioC] Imitating Affy's own steps   James W. MacDonald
• [BioC] Specifying a local CDF file for use with fitPLM or others   James W. MacDonald
• [BioC] Biostrings C interface :: example not compiling   Hervé Pagès
• [BioC] Error with read.maimages   lapereir at uc.cl
• [BioC] Query regarding Bioconductor package   Sean Davis
• [BioC] converting position from '-' strand to '+' strand   Tim Smith
• [BioC] converting position from '-' strand to '+' strand   James W. MacDonald
• [BioC] converting position from '-' strand to '+' strand   Hervé Pagès
• [BioC] Interpretation of genotype calls from Oligo crlmm algorithm   jeremy wilson
• [BioC] converting position from '-' strand to '+' strand   Michael Lawrence
• [BioC] converting position from '-' strand to '+' strand   michael watson (IAH-C)
• [BioC] converting position from '-' strand to '+' strand   Tim Smith
• [BioC] Error with unique   Erik Wright
• [BioC] Error with unique   Sean Davis
• [BioC] Error with unique   Erik Wright
• [BioC] Error with read.maimages   Martin Morgan
• [BioC] problem using Alternative CDF environments, CdfEnvAffy   Vincent Davis
• [BioC] Error with unique   Martin Morgan
• [BioC] problem using Alternative CDF environments, CdfEnvAffy   Martin Morgan
• [BioC] problem using Alternative CDF environments, CdfEnvAffy   Vincent Davis
• [BioC] Error with read.maimages   Vincent Carey
• [BioC] Query   sneha patil
• [BioC] Methylation data   Mohamed Lajnef
• [BioC] Methylation data   Prashantha Hebbar
• [BioC] Query regarding Bioconductor package   Sean Davis
• [BioC] Error with unique   Erik Wright
• [BioC] Error with unique   Erik Wright
• [BioC] Query   James W. MacDonald
• [BioC] Error with unique   Martin Morgan
• [BioC] Error with unique   Martin Morgan
• [BioC] Error with unique   Martin Morgan
• [BioC] Error with unique   Erik Wright
• [BioC] CGH analysis without genome positions   adam_pgsql
• [BioC] CGH analysis without genome positions   Sean Davis
• [BioC] CGH analysis without genome positions   Daniel Rico Rodriguez
• [BioC] CGH analysis without genome positions   Sean Davis
• [BioC] consensusString Function   Erik Wright
• [BioC] how to find the probe set ID using different CDF file?   Wolfgang Huber
• [BioC] consensusString Function   Heidi Dvinge
• [BioC] consensusString Function   Wolfgang Huber
• [BioC] consensusString Function   Patrick Aboyoun
• [BioC] CGH analysis without genome positions   adam_pgsql
• [BioC] CGH analysis without genome positions   Sean Davis
• [BioC] BioC packages for Human Gene 1.0 ST arrays   jiayu wen
• [BioC] how to handle multiprobes for one gene in illumina microarray   Hai-Ri Li
• [BioC] Query regarding memory allocation   sneha patil
• [BioC] how to find the probe set ID using different CDF file?   Groot, Philip de
• [BioC] BioC packages for Human Gene 1.0 ST arrays   Groot, Philip de
• [BioC] Query regarding memory allocation   Sean Davis
• [BioC] Mapping onto KO numbers (KEGG Orthology)   Alla Bulashevska
• [BioC] Methylation data   Mohamed Lajnef
• [BioC] Error in GO.db   Mayte Suarez-Farinas
• [BioC] Error in GO.db   Vincent Carey
• [BioC] Error in GO.db   Mayte Suarez-Farinas
• [BioC] Error in GO.db   Cristobal Fresno Rodríguez
• [BioC] Error with read.maimages   lapereir at uc.cl
• [BioC] consensusString Function   Erik Wright
• [BioC] Error in GO.db   Vincent Carey
• [BioC] Error with read.maimages   Martin Morgan
• [BioC] consensusString Function   Patrick Aboyoun
• [BioC] consensusString Function   Patrick Aboyoun
• [BioC] Error in GO.db   Mayte Suarez-Farinas
• [BioC] Error in GO.db   Vincent Carey
• [BioC] pdInfoBuilder: invalid class object ("ScalarCharacter")   Hooiveld, Guido
• [BioC] pdInfoBuilder: invalid class object ("ScalarCharacter")   Seth Falcon
• [BioC] pdInfoBuilder: invalid class object ("ScalarCharacter")   Hooiveld, Guido
• [BioC] pdInfoBuilder: invalid class object ("ScalarCharacter")   Vincent Carey
• [BioC] CGH analysis without genome positions   adam_pgsql
• [BioC] pdInfoBuilder: invalid class object ("ScalarCharacter")   Hooiveld, Guido
• [BioC] pdInfoBuilder: invalid class object ("ScalarCharacter")   Benilton Carvalho
• [BioC] CGH analysis without genome positions   Sean Davis
• [BioC] BioC packages for Human Gene 1.0 ST arrays   jiayu wen
• [BioC] memory allocation problem not solved   sneha patil
• [BioC] memory allocation problem not solved   Henrik Bengtsson
• [BioC] pdInfoBuilder: invalid class object ("ScalarCharacter")   Hooiveld, Guido
• [BioC] pdInfoBuilder: invalid class object ("ScalarCharacter")   Benilton Carvalho
• [BioC] memory allocation problem not solved   Sean Davis
• [BioC] Query regarding GEO Database   varpal singh
• [BioC] pdInfoBuilder: invalid class object ("ScalarCharacter")   Benilton Carvalho
• [BioC] Mapping onto KO numbers (KEGG Orthology)   James W. MacDonald
• [BioC] CDF environment missing for HuGene-1_0-st-v1   Legaie, Roxane
• [BioC] Query regarding GEO Database   Sean Davis
• [BioC] load failed for 'Rlibstree'   Paul Shannon
• [BioC] CDF environment missing for HuGene-1_0-st-v1   James W. MacDonald
• [BioC] error in import.exon.scheme, XPS package   Lisa Mu
• [BioC] error in import.exon.scheme, XPS package   cstrato
• [BioC] pvclust and distance matrices   Glazko, Galina
• [BioC] load failed for 'Rlibstree'   Seth Falcon
• [BioC] load failed for 'Rlibstree'   Hervé Pagès
• [BioC] load failed for 'Rlibstree'   Paul Shannon
• [BioC] load failed for 'Rlibstree'   Hervé Pagès
• [BioC] load failed for 'Rlibstree'   Tony Chiang
• [BioC] load failed for 'Rlibstree'   Paul Shannon
• [BioC] installation of Rgraphviz   Yanwei Tan
• [BioC] p values of time serie data with timecourse package?   Helen Zhou
• [BioC] rtracklayer 1.6: invalid class "ucscCart" object   Paul Shannon
• [BioC] rtracklayer 1.6: invalid class "ucscCart" object   Michael Lawrence
• [BioC] Query regarding AffylmGUI   varpal singh
• [BioC] Query regarding AffylmGUI   varpal singh
• [BioC] error in import.exon.scheme, XPS package   Henrik Bengtsson
• [BioC] Error GO.db package "term is not member of any ontology"   Ana Conesa
• [BioC] Error GO.db package "term is not member of any ontology"   Sean Davis
• [BioC] Error GO.db package "term is not member of any ontology"   Ana Conesa
• [BioC] Problems finding a matching R annotation file...   Nick Schurch
• [BioC] Error GO.db package "term is not member of any ontology"   Vincent Carey
• [BioC] Error GO.db package "term is not member of any ontology"   James W. MacDonald
• [BioC] Error GO.db package "term is not member of any ontology"   Ana Conesa
• [BioC] edgeR: pseudocounts, logConc and logFC   Ann Hess
• [BioC] Interpretation of genotype calls from Oligo crlmm algorithm   Benilton Carvalho
• [BioC] Help please: FCS binary to ascii text using bioconductor   David Lyon
• [BioC] Error GO.db package "term is not member of any ontology"   Martin Morgan
• [BioC] Error GO.db package "term is not member of any ontology"   Chao-Jen Wong
• [BioC] Error GO.db package "term is not member of any ontology"   James W. MacDonald
• [BioC] Query regarding AffylmGUI   Richard Friedman
• [BioC] Problems finding a matching R annotation file...   Marc Carlson
• [BioC] Help please: FCS binary to ascii text using bioconductor   Chao-Jen Wong
• [BioC] Help please: FCS binary to ascii text using bioconductor   David
• [BioC] edgeR: pseudocounts, logConc and logFC   Mark Robinson
• [BioC] snow library, question on clusterExport   mattia pelizzola
• [BioC] installation of Rgraphviz   Kasper Daniel Hansen
• [BioC] snow library, question on clusterExport   Martin Morgan
• [BioC] 'SRAdb useful for visualizing BAM files'   Paul Shannon
• [BioC] 'SRAdb useful for visualizing BAM files'   Sean Davis
• [BioC] 'SRAdb useful for visualizing BAM files'   Aaron Mackey
• [BioC] 'SRAdb useful for visualizing BAM files'   Jack Zhu
• [BioC] Problems in MAplot for affybatch objects   Javier Pérez Florido
• [BioC] 'SRAdb useful for visualizing BAM files'   Michael Lawrence
• [BioC] Problems in MAplot for affybatch objects   Ben Bolstad
• [BioC] using Blat in R   Fahim Md
• [BioC] snow library, question on clusterExport   Pavelka, Norman
• [BioC] 'SRAdb useful for visualizing BAM files'   Aaron Mackey
• [BioC] 'SRAdb useful for visualizing BAM files'   Sean Davis
• [BioC] normalization between different microarray   chittabrata mal
• [BioC] normalization between different microarray   Paul Leo
• [BioC] Imitating Affy's own steps   Timothy Wu
• [BioC] RNA degradation plot   Assa Yeroslaviz
• [BioC] RNA degradation plot   Benilton Carvalho
• [BioC] RNA degradation plot   Assa Yeroslaviz
• [BioC] Imitating Affy's own steps   Henrik Bengtsson
• [BioC] RNA degradation plot   Benilton Carvalho
• [BioC] Imitating Affy's own steps   James W. MacDonald
• [BioC] 'SRAdb useful for visualizing BAM files'   Aaron Mackey
• [BioC] 'SRAdb useful for visualizing BAM files'   Jack Zhu
• [BioC] Colouring limma MA plot   adam_pgsql
• [BioC] RNA degradation plot   Anthony Ferrari
• [BioC] snow library, question on clusterExport   mattia pelizzola
• [BioC] snow library, question on clusterExport   Martin Morgan
• [BioC] Recycling vars with IRanges::reflect   Steve Lianoglou
• [BioC] Recycling vars with IRanges::reflect   Patrick Aboyoun
• [BioC] Imitating Affy's own steps   cstrato
• [BioC] Recycling vars with IRanges::reflect   Steve Lianoglou
• [BioC] using Blat in R   Sean Davis
• [BioC] Help please: FCS binary to ascii text using bioconductor   Josef Spidlen
• [BioC] using Blat in R   J.delasHeras at ed.ac.uk
• [BioC] query and subject hits in findOverlaps through different space names   Robert Castelo
• [BioC] Colouring limma MA plot   Wolfgang Huber
• [BioC] [A question on goseq package with UCSC known gene ID]   sunghee OH
• [BioC] Adjusting contrast in a heatmap   Anthony Ferrari
• [BioC] Microarray image files in PDF files   Mike Walter
• [BioC] Adjusting contrast in a heatmap   Sean Davis
• [BioC] Microarray image files in PDF files   James W. MacDonald
• [BioC] query and subject hits in findOverlaps through different space names   Michael Lawrence
• [BioC] query and subject hits in findOverlaps through different space names   James W. MacDonald
• [BioC] Microarray image files in PDF files   Mike Walter
• [BioC] query and subject hits in findOverlaps through different space names   Michael Lawrence
• [BioC] For ChIPpeakAnno Users- query and subject hits in findOverlaps through different space names   Zhu, Julie
• [BioC] Microarray image files in PDF files   James W. MacDonald
• [BioC] Microarray image files in PDF files   Benilton Carvalho
• [BioC] Advanced R Programming for Bioinformatics, May 20-21   Martin Morgan
• [BioC] Agi4x44PreProcess_1.6.0 Error in readGenericHeader(fullname, columns = columns, sep = sep) :   Turner, Julia
• [BioC] Microarray image files in PDF files   Kevin Coombes
• [BioC] Plotting trees - hclust object vs dendrogram   Anthony Ferrari
• [BioC] how to find the list of probe sets in Affy U133A that correspond to housekeeping genes   James Anderson
• [BioC] query and subject hits in findOverlaps through different space names   Robert Castelo
• [BioC] query and subject hits in findOverlaps through different space names   Martin Morgan
• [BioC] Colouring limma MA plot   Gordon K Smyth
• [BioC] Problem writing large FCS files using write.FCS in flowCore 1.12.0   Robert Bruggner
• [BioC] Reg: Different clustering methods available for affy data   Rohit Farmer
• [BioC] genefilter findLargest and Illumina ids   Lavinia Gordon
• [BioC] Reg: Different clustering methods available for affy data   Antti Honkela
• [BioC] Reg: Different clustering methods available for affy data   Sean Davis
• [BioC] Qpgraph error msg   Robert Castelo
• [BioC] Reg: PCA in bioconductor   Rohit Farmer
• [BioC] Reg: PCA in bioconductor   Cristobal Fresno Rodríguez
• [BioC] Medline mining of microarray data (w/ synonyms and extra keyword?)   Michael Imbeault
• [BioC] Reg: PCA in bioconductor   Richard Pearson
• [BioC] iFLow   Abbhirami Rajagopal
• [BioC] Reg: PCA in bioconductor   Sean Davis
• [BioC] iFLow   Steve Lianoglou
• [BioC] KEGG overrepresentation loses genes   Anne Kupczok
• [BioC] Medline mining of microarray data (w/ synonyms and extra keyword?)   James F. Reid
• [BioC] Reg: Different clustering methods available for affy data   Thomas Girke
• [BioC] Medline mining of microarray data (w/ synonyms and extra keyword?)   Saurin D. Jani
• [BioC] R/BioC/Mac keeps going and going   Loren Engrav
• [BioC] quality assessment of microarray using arrayQualityMetrics   Amit
• [BioC] how to find the list of probe sets in Affy U133A that correspond to housekeeping genes   Marc Carlson
• [BioC] how to find the list of probe sets in Affy U133A that correspond to housekeeping genes   Steve Lianoglou
• [BioC] vennSelect problem with hgu133plus package   Maxim
• [BioC] vennSelect problem with hgu133plus package   James W. MacDonald
• [BioC] how to find the list of probe sets in Affy U133A that correspond to housekeeping genes   Christos Hatzis
• [BioC] genefilter findLargest and Illumina ids   Pan Du
• [BioC] KEGG overrepresentation loses genes   Marc Carlson
• [BioC] quality assessment of microarray using arrayQualityMetrics   Wolfgang Huber
• [BioC] Plotting trees - hclust object vs dendrogram   Wolfgang Huber
• [BioC] RNAseq expression analysis using DESeq: technical replicates, paired samples   Jinfeng Liu
• [BioC] Microarray image files in PDF files   Wolfgang Huber
• [BioC] Problem writing large FCS files using write.FCS in flowCore 1.12.0   Nishant Gopalakrishnan
• [BioC] Adjusting contrast in a heatmap   Wolfgang Huber
• [BioC] genefilter findLargest and Illumina ids   Lavinia Gordon
• [BioC] Microarray image files in PDF files   Mike Walter
• [BioC] Adjusting contrast in a heatmap   Simon Anders
• [BioC] Limma design matrix contrast   Timothy Wu
• [BioC] RNAseq expression analysis using DESeq: technical replicates, paired samples   Simon Anders
• [BioC] quality assessment of microarray using arrayQualityMetrics   Amit
• [BioC] limma topTable columns and new interface?   Timothy Wu
• [BioC] limma topTable columns and new interface?   Sean Davis
• [BioC] limma topTable columns and new interface?   Timothy Wu
• [BioC] Fwd: limma topTable columns and new interface?   Sean Davis
• [BioC] limma topTable columns and new interface?   January Weiner
• [BioC] Microarray image files in PDF files   Benilton Carvalho
• [BioC] analysis of differential expression of small RNAs sequences   Andreia Fonseca
• [BioC] quality assessment of microarray using arrayQualityMetrics   Audrey Kauffmann
• [BioC] genefilter findLargest and Illumina ids   Pan Du
• [BioC] Illumina Infinium Background   Gildas Mazo
• [BioC] KEGG Pathway modules   Alla Bulashevska
• [BioC] comparison of two sets of developmental study   Yan Zhou
• [BioC] Agi4x44PreProcess_1.6.0 Error in readGenericHeader(fullname, columns = columns, sep = sep) :   Francois Pepin
• [BioC] NA/NaN/Inf in foreign function call in mas5calls function   Karthik Ramaswamy Padmanabhan
• [BioC] About qsub -q highmem   sisitzq at gmail.com
• [BioC] No changes between Groups using GeneST Arrays from Affymetrix   botto
• [BioC] About qsub -q highmem   Sean Davis
• [BioC] Extract a subset of an MAList object   Mohamed Lajnef
• [BioC] an error in normalize.quantiles {preprocessCore} function?   697820169
• [BioC] Extract a subset of an MAList object   Sean Davis
• [BioC] MAList   Sean Davis
• [BioC] an error in normalize.quantiles {preprocessCore} function?   Benilton Carvalho
• [BioC] an error in normalize.quantiles {preprocessCore} function?   bmb at bmbolstad.com
• [BioC] Eleonore Gravier/CURIE est absent(e).   eleonore.gravier at curie.net
• [BioC] Memory and vector size management on linux 64bit   Manca Marco (PATH)
• [BioC] Memory and vector size management on linux 64bit   Benilton Carvalho
• [BioC] R: Memory and vector size management on linux 64bit   Manca Marco (PATH)
• [BioC] NA/NaN/Inf in foreign function call in mas5calls function   cstrato
• [BioC] Memory and vector size management on linux 64bit   Benilton Carvalho
• [BioC] Bug in IRanges package?   Jim Nemesh
• [BioC] Bug in IRanges package?   Patrick Aboyoun
• [BioC] Error on se.exprs(sample.ExpressionSet)   Peng Yu
• [BioC] NA/NaN/Inf in foreign function call in mas5calls function   James W. MacDonald
• [BioC] Error on se.exprs(sample.ExpressionSet)   Martin Morgan
• [BioC] BioC 2010, July (28), 29 and 30   Martin Morgan
• [BioC] analysis of differential expression of small RNAs sequences   Simon Anders
• [BioC] [R] Poblems wih EBImage   Gregoire Pau
• [BioC] load all data sets in a package   carol white
• [BioC] load all data sets in a package   Vincent Carey
• [BioC] EBImage   R Heberto Ghezzo, Dr
• [BioC] Error in setQCEnvironment(cdfn)-reg   NUTAN CHAUHAN
• [BioC] EBImage   Gregoire Pau
• [BioC] Error in setQCEnvironment(cdfn)-reg   Sean Davis
• [BioC] Affymetrix differential genes   santana sarma
• [BioC] hugene10stv1cdf   Christoph Knapp
• [BioC] Bioconductor - hugene10stv1cdf not available   Christoph Knapp
• [BioC] Bioconductor - hugene10stv1cdf not available   Benilton Carvalho
• [BioC] Bioconductor - hugene10stv1cdf not available   Christoph Knapp
• [BioC] Bioconductor - hugene10stv1cdf not available   Christoph Knapp
• [BioC] Bioconductor - hugene10stv1cdf not available   Benilton Carvalho
• [BioC] Bioconductor - hugene10stv1cdf not available   Benilton Carvalho
• [BioC] GeneMeta for 2 color microarray   Paul Leo
• [BioC] Bioconductor - hugene10stv1cdf not available   Christoph Knapp
• [BioC] error in loading 'org.Hs.eg.db'   LiYun
• [BioC] COURSES : Intro to R / Microarray Analysis Using R at Imperial College, LONDON   North, Bernard V
• [BioC] Reg: GSEA   Rohit Farmer
• [BioC] Reg: GSEA   Andreia Fonseca
• [BioC] Bioconductor - hugene10stv1cdf not available   Benilton Carvalho
• [BioC] Reg: GSEA   Saroj K Mohapatra
• [BioC] Reg: GSEA   Rohit Farmer
• [BioC] Bioconductor Digest, Vol 86, Issue 19   Sherri Christian
• [BioC] comparison of two sets of developmental study   Steve Lianoglou
• [BioC] comparison of two sets of developmental study   Yan Zhou
• [BioC] comparison of two sets of developmental study   Steve Lianoglou
• [BioC] hugene10stv1cdf   James W. MacDonald
• [BioC] hugene10stv1cdf   Anthony Bosco
• [BioC] error in loading 'org.Hs.eg.db'   Seth Falcon
• [BioC] ATTN: Clark Wilson filtering for present calls   Sinha, Mala
• [BioC] comparison of two sets of developmental study   Yan Zhou
• [BioC] comparison of two sets of developmental study   Steve Lianoglou
• [BioC] crlmm and HumanAffy250K SNP   Nolwenn Le Meur
• [BioC] Import files from Applied Biosystems 7900HT?   Brian Diggs
• [BioC] crlmm and HumanAffy250K SNP   Benilton Carvalho
• [BioC] Bioconductor - hugene10stv1cdf not available   Christoph Knapp
• [BioC] Reg: GSEA   Marc Carlson
• [BioC] KEGG Pathway modules   Marc Carlson
• [BioC] Bioconductor - hugene10stv1cdf not available   Sherri Christian
• [BioC] Bioconductor - hugene10stv1cdf not available   Christoph Knapp
• [BioC] Bioconductor - hugene10stv1cdf not available   Sean Davis
• [BioC] sequence analysis tutorial   Weiwei Shi
• [BioC] About qsub -q highmem   zhiqun tang
• [BioC] [maSigPro] How to analyze 2-colour microarrays?   Maciej Jończyk
• [BioC] Nimblegen CGH ringo to snapCGH   Chris Fenton
• [BioC] Bioconductor - hugene10stv1cdf not available   James W. MacDonald
• [BioC] edgeR: common vs tagwise dispersion   Ann Hess
• [BioC] ChIPpeakAnno BED2RangedData   Abirami Subbu
• [BioC] loop over IRanges spaces   Yvan
• [BioC] edgeR: common vs tagwise dispersion   Mark Robinson
• [BioC] loop over IRanges spaces   Yvan
• [BioC] HTqPCR only works for 384 qPCR plates   Andreia Fonseca
• [BioC] loop over IRanges spaces   Michael Lawrence
• [BioC] HTqPCR only works for 384 qPCR plates   axel.klenk at actelion.com
• [BioC] ChIPpeakAnno BED2RangedData   Zhu, Julie
• [BioC] HTqPCR only works for 384 qPCR plates   Andreia Fonseca
• [BioC] HTqPCR only works for 384 qPCR plates   axel.klenk at actelion.com
• [BioC] HTqPCR version and plotCtOverview scaling errors   Michael Muratet
• [BioC] normalisation + sam   Mike Dewar
• [BioC] HTqPCR version and plotCtOverview scaling errors   Heidi Dvinge
• [BioC] HTqPCR only works for 384 qPCR plates   Heidi Dvinge
• [BioC] Import files from Applied Biosystems 7900HT?   Heidi Dvinge
• [BioC] XPS: Human Gene 1.0 ST v1 Summarization using Affy Library r4   Luis Campos
• [BioC] HTqPCR version and plotCtOverview scaling errors   Michael Muratet
• [BioC] XPS: Human Gene 1.0 ST v1 Summarization using Affy Library r4   cstrato
• [BioC] XPS: Human Gene 1.0 ST v1 Summarization using Affy Library r4   cstrato
• [BioC] Import files from Applied Biosystems 7900HT?   Michael Muratet
• [BioC] Multiple genes per probeset   Richard Friedman
• [BioC] XPS: Human Gene 1.0 ST v1 Summarization using Affy Library r4   Luis Campos
• [BioC] R courses ***May-June 2010*** R Programming Essentials and Advanced Techniques by XLSolutions in USA Cities   sue at xlsolutions-corp.com
• [BioC] R courses ***May-June 2010*** R Programming Essentials and Advanced Techniques by XLSolutions in USA Cities   sue at xlsolutions-corp.com
• [BioC] edgeR: common vs tagwise dispersion   Gordon K Smyth
• [BioC] edgeR: common vs tagwise dispersion   Gordon K Smyth
• [BioC] Multiple genes per probeset   James MacDonald
• [BioC] No changes between Groups using GeneST Arrays from Affymetrix   Mike Walter
• [BioC] Nimblegen CGH ringo to snapCGH   Joern Toedling
• [BioC] package to handle Infinium iSelect HD Custom Genotyping   Ramzi TEMANNI
• [BioC] qPCR event preview - April 2010   qPCR event preview
• [BioC] loop over IRanges spaces   Yvan
• [BioC] Problems using rMAT tutorial   Patrick Schorderet
• [BioC] loop over IRanges spaces   Michael Dondrup
• [BioC] loop over IRanges spaces   Michael Lawrence
• [BioC] Nimblegen CGH ringo to snapCGH   John Marioni
• [BioC] Import files from Applied Biosystems 7900HT?   Brian Diggs
• [BioC] normalisation + sam   Wolfgang Huber
• [BioC] Problems using rMAT tutorial   Wolfgang Huber
• [BioC] Import files from Applied Biosystems 7900HT?   Heidi Dvinge
• [BioC] Import files from Applied Biosystems 7900HT?   Michael Muratet
• [BioC] Import files from Applied Biosystems 7900HT?   Brian Diggs
• [BioC] Question about quantile normalization in normalize.AffyBatch.quantiles   Owen Solberg
• [BioC] loop over IRanges spaces   Yvan
• [BioC] Regarding hugene10stv1 array   sneha patil
• [BioC] exonMap problems   Tobias Petri
• [BioC] snapCGH genomePlot chrominfo   Chris Fenton
• [BioC] snapCGH genomePlot chrominfo   Sean Davis
• [BioC] exonMap problems   Tim Yates
• [BioC] loop over IRanges spaces   Michael Lawrence
• [BioC] loop over IRanges spaces   Michael Lawrence
• [BioC] Question about quantile normalization in normalize.AffyBatch.quantiles   Ben Bolstad
• [BioC] [maSigPro] How to analyze 2-colour microarrays?   Maria Jose Nueda
• [BioC] normalisation + sam   Mike Dewar
• [BioC] pdInfoBuider: how to view SQL scheme?   Hooiveld, Guido
• [BioC] pdInfoBuider: how to view SQL scheme?   James W. MacDonald
• [BioC] pdInfoBuider: how to view SQL scheme?   Benilton Carvalho
• [BioC] pdInfoBuider: how to view SQL scheme?   Benilton Carvalho
• [BioC] normalisation + sam   Wolfgang Huber
• [BioC] normalisation + sam   Wolfgang Huber
• [BioC] HTqPCR rbind() function   Michael Muratet
• [BioC] Bioconductor 2.6 is released   Patrick Aboyoun
• [BioC] Agi4x44PreProcess_1.6.0 Error in readGenericHeader(fullname, columns = columns, sep = sep) :   Francois Pepin
• [BioC] normalisation + sam   Wolfgang Huber
• [BioC] Bioconductor 2.6 is released   Thomas Girke
• [BioC] Bioconductor 2.6 is released   Thomas Girke
• [BioC] GenomicFeatures.Hsapiens.UCSC.hg19   burak kutlu
• [BioC] [maSigPro] How to analyze 2-colour microarrays?   Maciej Jończyk
• [BioC] Error encountered while using AMORE package. "Error in train.method(net, P, T, show.step)...."   Suyog Pol
• [BioC] HTqPCR rbind() function   Heidi Dvinge
• [BioC] htqPCR question   Heidi Dvinge
• [BioC] GenomicFeatures.Hsapiens.UCSC.hg19   Burak Kutlu
• [BioC] [maSigPro] How to analyze 2-colour microarrays?   Maciej Jończyk
• [BioC] GenomicFeatures.Hsapiens.UCSC.hg19   Hervé Pagès
• [BioC] Bioconductor 2.6 is released   Lax
• [BioC] Bioconductor 2.6 is released   Vincent Carey
• [BioC] GOstats and htmlReport   Loren Engrav
• [BioC] GOstats and htmlReport   Seth Falcon
• [BioC] CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010   Amandeep Sidhu
• [BioC] topGO:what is the good way to work out FDR?   jiayu wen
• [BioC] Bioconductor 2.6 is released   Robert Castelo
• [BioC] htqPCR question   Andreia Fonseca
• [BioC] about GO stats   avinash gupta
• [BioC] about GO stats   James W. MacDonald
• [BioC] edgeR - technical and biological replication   Jakob Hedegaard
• [BioC] Bioconductor 2.6 is released   Edwin Groot
• [BioC] iFlow   Abbhirami Rajagopal
• [BioC] Ph.D- Help   Sean Davis
• [BioC] edgeR - technical and biological replication   Kasper Daniel Hansen
• [BioC] GOstats minus IEA?   Loren Engrav
• [BioC] AgiMicroRna readMicroRnaAFE error   Christian Ruckert
• [BioC] CGHcall problem   Erik Dassi
• [BioC] GOstats minus IEA?   Vincent Carey
• [BioC] GenomicFeatures.Hsapiens.UCSC.hg19   Sean Davis
• [BioC] iFlow   Patrick Aboyoun
• [BioC] loop over IRanges spaces   Patrick Aboyoun
• [BioC] using biomaRt to query cds coordinates with respect to the transcript for a given gene   Andrew Yee
• [BioC] vennDiagram Statistics Advice   Noah Dowell
• [BioC] GOstats minus IEA?   Loren Engrav
• [BioC] GOstats minus IEA?   Vincent Carey
• [BioC] ShortRead QA Feature   Dario Strbenac
• [BioC] custom Affymetrix   Vermesan Oana
• [BioC] Extracting pacient ID from AffyBatch objects   Popa Tiberiu
• [BioC] ShortRead Per Cycle Score   Dario Strbenac
• [BioC] htqPCR question   Heidi Dvinge
• [BioC] annotation of affymetrix microarray data   Taylor, Katie
• [BioC] Extracting pacient ID from AffyBatch objects   Sean Davis
• [BioC] Fwd: Regarding hugene10stv1 array   sneha patil
• [BioC] CDF for Cytogenetics_Array   Lenka Radova
• [BioC] CDF for Cytogenetics_Array   Wolfgang Huber
• [BioC] custom Affymetrix   Wolfgang Huber
• [BioC] CDF for Cytogenetics_Array   Benilton Carvalho
• [BioC] vennDiagram Statistics Advice   Wolfgang Huber
• [BioC] CDF for Cytogenetics_Array   Lenka Radova
• [BioC] CDF for Cytogenetics_Array   Sean Davis
• [BioC] CDF for Cytogenetics_Array   Wolfgang Huber
• [BioC] iFlow error   Abbhirami Rajagopal
• [BioC] rMAT tutorial. Data file too large?   Patrick Schorderet
• [BioC] Fwd: Regarding hugene10stv1 array   cstrato
• [BioC] rMAT tutorial. Data file too large?   Steve Lianoglou
• [BioC] GOstats minus IEA?   Loren Engrav
• [BioC] GOstats and htmlReport   Loren Engrav
• [BioC] GOMiner vs GOstats   Loren Engrav
• [BioC] rMAT tutorial. Data file too large?   Patrick Schorderet
• [BioC] vennDiagram Statistics Advice   Noah Dowell
• [BioC] rMAT tutorial. Data file too large?   Patrick Aboyoun
• [BioC] rMAT tutorial. Data file too large?   Henrik Bengtsson
• [BioC] Basic question about Limma   Guido Leoni
• [BioC] rMAT tutorial. Data file too large?   Droit Arnaud
• [BioC] Basic question about Limma   Neel Aluru
• [BioC] rMAT tutorial. Data file too large?   Patrick Schorderet
• [BioC] iFlow error   Patrick Aboyoun
• [BioC] rMAT tutorial. Data file too large?   Droit Arnaud
• [BioC] Hmisc 3.7.0   Francesco Mancuso
• [BioC] Basic question about Limma   Heidi Dvinge
• [BioC] Hmisc 3.7.0   Benilton Carvalho
• [BioC] Hmisc 3.7.0   Patrick Aboyoun
• [BioC] Question about the number of human genes annotated in Pathway of REACTOAM in biomaRt   Gilbert Feng
• [BioC] annotation of affymetrix microarray data   Wolfgang Huber
• [BioC] annotation of affymetrix microarray data   Sean Davis
• [BioC] ShortRead Per Cycle Score   mtmorgan at fhcrc.org
• [BioC] ShortRead QA Feature   mtmorgan at fhcrc.org
• [BioC] Help in web browser   Chintanu
• [BioC] edgeR - technical and biological replication   Gordon K Smyth
• [BioC] Help in web browser   James MacDonald
• [BioC] annotation of affymetrix microarray data   Loren Engrav
• [BioC] custom Affymetrix   Vermesan Oana
• [BioC] Model simplification on microarray data   Paolo Innocenti
• [BioC] CDF for Cytogenetics_Array   Lenka Radova
• [BioC] custom Affymetrix   Wolfgang Huber
• [BioC] heatmap.2   carol white
• [BioC] Problems in MAplot for affybatch objects   Javier Pérez Florido
• [BioC] Basic question about Limma   Guido Leoni
• [BioC] heatmap.2   Sean Davis
• [BioC] biomaRt inconsistency: a missing annotation causes a failed query   Nenad Bartonicek
• [BioC] single channel analysis   David martin
• [BioC] biomaRt inconsistency: a missing annotation causes a failed query   Steffen Durinck
• [BioC] ShortRead report function crash in x86_64-apple   Hugo Naya
• [BioC] single channel analysis   James W. MacDonald
• [BioC] ShortRead with BAM   Duke
• [BioC] arrayQualityMetrics: beutifying the outputs   Sylvain Foisy
• [BioC] ShortRead with BAM   James W. MacDonald
• [BioC] single channel analysis   David martin
• [BioC] problem in ReadAffy function (affy and affyio libraries)   Groot, Philip de
• [BioC] Reading .bpmap files for homemade tiling arrays   Patrick Schorderet
• [BioC] ShortRead with BAM   Duke
• [BioC] pulling functional information for SNPs   Kay Jaja
• [BioC] Basic question about Limma   Heidi Dvinge
• [BioC] beadarray illumina Human610-Quadv1_B.bpm   Nolwenn Le Meur
• [BioC] beadarray illumina Human610-Quadv1_B.bpm   Vincent Carey
• [BioC] beadarray illumina Human610-Quadv1_B.bpm   Mark Dunning
• [BioC] Could I use "genefilter" package for MArray data ?   Xiaokuan Wei
• [BioC] heatmap.2   carol white
• [BioC] heatmap.2   Sean Davis
• [BioC] help: limma and changing gene results!   Joseph Skaf
• [BioC] heatmap.2   carol white
• [BioC] heatmap.2   Sean Davis
• [BioC] pulling functional information for SNPs   James W. MacDonald
• [BioC] [maSigPro] Error in T.fit - NAs introduced by coercion   Maciej Jończyk
• [BioC] Could I use "genefilter" package for MArray data ?   Wolfgang Huber
• [BioC] ShortRead Per Cycle Score   Dario Strbenac
• [BioC] Ph.D - Help   Kalai Vani
• [BioC] beadarray illumina Human610-Quadv1_B.bpm   Matthew Ritchie
• [BioC] [maSigPro] Error in T.fit - NAs introduced by coercion   Maria Jose Nueda
• [BioC] How to normalize Illumina bead-level data ?   Jonas Mandel
• [BioC] loop over IRanges spaces   Yvan
• [BioC] (no subject)   varpal singh
• [BioC] single channel analysis   Maciej Jończyk
• [BioC] Genominator question   rcaloger
• [BioC] single channel analysis   David martin
• [BioC] ShortRead Per Cycle Score   James W. MacDonald
• [BioC] (no subject)   Andreia Fonseca
• [BioC] help: limma and changing gene results!   James W. MacDonald
• [BioC] ShortRead report function crash in x86_64-apple   Hugo Naya
• [BioC] (no subject)   Anthony Ferrari
• [BioC] New SNPlocs data package for Human (dbSNP BUILD 131)   Hervé Pagès
• [BioC] loop over IRanges spaces   Patrick Aboyoun
• [BioC] rtracklayer - getTable   Li, Xuejun
• [BioC] New SNPlocs data package for Human (dbSNP BUILD 131)   Hervé Pagès
• [BioC] New SNPlocs data package for Human (dbSNP BUILD 131)   Hervé Pagès
• [BioC] hugene10stv1probe   sneha patil
• [BioC] rtracklayer - getTable   Michael Lawrence
• [BioC] Annotation of orthologs   Nick Schurch
• [BioC] htqPCR question   Andreia Fonseca
• [BioC] Annotation of orthologs   Joern Toedling
• [BioC] hugene10stv1probe   James W. MacDonald
• [BioC] Annotation of orthologs   James W. MacDonald
• [BioC] arrayQualityMetrics: beutifying the outputs   Audrey Kauffmann
• [BioC] Annotation of orthologs   Alexandre Kuhn
• [BioC] HTqPCR (plotCtOverview) problem   Michael Muratet
• [BioC] HTqPCR (plotCtOverview) problem   Heidi Dvinge
• [BioC] HTqPCR (plotCtOverview) problem   Michael Muratet
• [BioC] htqPCR question   Heidi Dvinge
• [BioC] HTqPCR (plotCtOverview) problem   Heidi Dvinge
• [BioC] HTqPCR (plotCtOverview) problem   Michael Muratet

Last message date: Fri Apr 30 23:09:24 CEST 2010
Archived on: Fri Apr 30 23:09:42 CEST 2010

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