[BioC] Import files from Applied Biosystems 7900HT?
Brian Diggs
diggsb at ohsu.edu
Mon Apr 19 23:26:08 CEST 2010
Though I have used R for a few years, I am starting a project where this
is my first real use of Bioconductor and I am having a problem reading
expression data from files. The files are created by an Applied
Biosystems 7900HT machine. I found the ABarray package, but that only
claims to work with AB1700 data. On a lark, I tried to use it for my
data, but got an error
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines,
na.strings, :
line 2 did not have 3 elements
which seems consistent with a file not being in the right format. Can
anyone tell me if there exists a package that can read this data into an
ExpressionSet? Or has anyone even used Bioconductor with data from
this, and, if so, what needs to be done to import the data?
--
Brian Diggs
Senior Research Associate, Department of Surgery, Oregon Health &
Science University
More information about the Bioconductor
mailing list