[BioC] Methylation data

[Mohamed Lajnef]

Prashantha,

Thank you very much, MeDIP protocol is used  for our project!

Regards

Prashantha Hebbar a écrit :
> Hi Mohamed,
>
> Bioconductor packages are available but depends on the type of 
> experimental protocol followed. If you have followed DMH method, you 
> can use limma, If you have used MeDIP, you can use MEDME.
>
> There is another package for MeDIP but which do not come under R, that 
> is Batman.
>
> Regards,
> Prashantha
>
> Prashantha Hebbar Kiradi,
> Manipal University,
> Manipal, India
>
> --- On *Tue, 4/6/10, Mohamed Lajnef /<Mohamed.lajnef at inserm.fr>/* wrote:
>
>
>     From: Mohamed Lajnef <Mohamed.lajnef at inserm.fr>
>     Subject: [BioC] Methylation data
>     To: bioconductor at stat.math.ethz.ch
>     Date: Tuesday, April 6, 2010, 8:16 AM
>
>     Dear All,
>
>     I 'am looking for a package in R to analyse methylation databases
>     generated from Agilent CpG Islanfds.
>     Any help will be appreciated
>     Regards
>     Mohamed
>
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>


-- 


Mohamed Lajnef,IE 
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