[BioC] Reg: GSEA

[Rohit Farmer]

Thanks Andreia ...

This GOstats package will also work with KEGG database pathway data or
i have to use another package and there is one more package i found
that is GSEAbase ... so which one is better or can say easy to use and
implement ...

Thanks

rohit

On 4/19/10, Andreia Fonseca <andreia.fonseca at gmail.com> wrote:
> Dear Farmer,
>
> you can use GOstats package.
> regards,
> Andreia
>
> On Mon, Apr 19, 2010 at 10:59 AM, Rohit Farmer
> <rohit.farmer at gmail.com>wrote:
>
>> Hello everyone ...
>>
>> I just did a moderate t statistics using limma package and found out a
>> list of genes which are differentially expressed now i wan to go for
>> gene set enrichment analysis using GO terms and pathway analysis ...
>> so can anyone suggest me the bioconductor packages which i can use for
>> the same ..
>>
>> Thanks and regards
>>
>> Rohit
>> --
>> Rohit Farmer
>> M.Tech Bioinformatics
>> Department of Computational Biology and Bioinformatics
>> Jacob School of Biengineering and Biotechnology
>> Sam Higginbottom Institute of Agriculture, Technology and Sciences
>> (Formerly known as Allahabad Agricultural Institute - Deemed University)
>> Allahabad, UP, INDIA - 211 007
>> Ph. No. 9839845093, 9415261403
>> e-Mail rohit.farmer at gmail.com
>> Blog http://rohitsspace.blogspot.com
>>
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>
>
>
> --
> --------------------------------------------
> Andreia J. Amaral
> Unidade de Imunologia Clínica
> Instituto de Medicina Molecular
> Universidade de Lisboa
> email: andreiaamaral at fm.ul.pt
>          andreia.fonseca at gmail.com
>


-- 
Rohit Farmer
M.Tech Bioinformatics
Department of Computational Biology and Bioinformatics
Jacob School of Biengineering and Biotechnology
Sam Higginbottom Institute of Agriculture, Technology and Sciences
(Formerly known as Allahabad Agricultural Institute - Deemed University)
Allahabad, UP, INDIA - 211 007
Ph. No. 9839845093, 9415261403
e-Mail rohit.farmer at gmail.com
Blog http://rohitsspace.blogspot.com