[BioC] New SNPlocs data package for Human (dbSNP BUILD 131)

Hervé Pagès hpages at fhcrc.org
Fri Apr 30 07:11:39 CEST 2010


Hervé Pagès wrote:
[...]
> The injection mechanism has changed. Now it uses an internal (defined
                                                    ^^^^^^^^^^^
                                        I meant:  an internal table

H.

> in the SNPlocs package) to translate from UCSC chromosome names to
> NCBI/dbSNP chromosome names. This new mechanism is implemented in
> BSgenome 1.16.1. This is why, in my previous email, I wrote:
> 
>   Please make sure you update BSgenome to >= 1.16.1 (available in
>   about 12 hours thru biocLite) before you try to inject those SNPs
>   in BSgenome.Hsapiens.UCSC.hg19.
> 
> Cheers,
> H.



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