[BioC] Error in GO.db
Mayte Suarez-Farinas
farinam at mail.rockefeller.edu
Wed Apr 7 16:39:03 CEST 2010
Hi
I have been getting an error in packages db family.
First I was getting "Error in checkDBSCHEMA(dbconn, "GO_DB") :
invalid DB schema version (found 2.0, expected 2.1)"
I decided to reinstall R with version 2.10.1 and reinstall all
packages again.
still I have problems with GO.
I reinstalled through the Package Manager and by using biocLite
directly.
It installed fine but when I load it I got the following error:
library(GO.db)
Error in get(hookname, envir = env, inherits = FALSE) :
internal error -3 in R_decompress1
Error: package/namespace load failed for 'GO.db'
I hope someone can guide me...
Best
Mayte
sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-apple-darwin9.8.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RSQLite_0.7-3 DBI_0.2-5 AnnotationDbi_1.9.8
Biobase_2.6.1
loaded via a namespace (and not attached):
[1] affy_1.24.2 affyio_1.14.0 annotate_1.24.1
Biostrings_2.14.12
[5] gcrma_2.18.1 genefilter_1.28.2 IRanges_1.4.16
preprocessCore_1.8.0
[9] simpleaffy_2.22.0 splines_2.10.1 survival_2.35-7
tools_2.10.1
[13] xtable_1.5-6
Mayte Suarez-Farinas
Research Associate, The Rockefeller University
Biostatistician, The Rockefeller University Hospital
1230 York Ave, Box 178,
New York, NY, 10021
+1(212) 327-8213
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