[BioC] Error GO.db package "term is not member of any ontology"

[Ana Conesa]

Thanks Sean for your fast reply

This is my sessionInfo()


> sessionInfo()
R version 2.10.0 (2009-10-26)
x86_64-pc-linux-gnu

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] GO.db_2.3.5         RSQLite_0.7-1       DBI_0.2-4
[4] annotate_1.24.1     AnnotationDbi_1.8.2 Biobase_2.6.1

loaded via a namespace (and not attached):
[1] xtable_1.5-5
> get('GO0090153',GOTERM)
Error in .checkKeys(value, Lkeys(x), x at ifnotfound) :
  value for "GO0090153" not found
>


Any hint?

Ana



On Friday 09 April 2010 15:03:20 Sean Davis wrote:
> get('GO0090153',GOTERM)



-- 
Ana Conesa
Bioinformatics and Genomics Department
Centro de Investigaciones Principe Felipe
Avda. Autopista Saler 16,
46012 Valencia, Spain
Phone: +34 96 328 96 80
Fax:   +34 96 328 97 01
http://bioinfo.cipf.es/aconesa
http://www.blast2go.org
==========================================
FIRST INTERNATIONAL COURSE IN AUTOMATED 
FUNCTIONAL ANNOTATION AND DATA MINING
Valencia/Orlando, September/October 2009
http://bioinfo.cipf.es/blast2gocourse