[BioC] Medline mining of microarray data (w/ synonyms and extra keyword?)

[James F. Reid]

Hi Michael,

look at org.Hs.egPMID in the org.Hs.eg.db annotation package if you are 
starting from NCBI Entrez Gene identifiers or the analogue extension 
PMID for any affy based annotation package.

HTH.
J.


Michael Imbeault wrote:
> Hello,
> 
> Is there a Bioconductor solution to Medline mining? Say, for a given set 
> of affy identifiers, find gene names, their synonyms, and the pubmed 
> count of abstracts cooccurring with a given keyword (such as a disease 
> name)?
> 
> If not available in Bioconductor, is any other tool available for this? 
> Searches in bioinformatic journals yield only old tools which (for the 
> most part) have dead urls.
> 
> Thanks,
> Michael
> 
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