[BioC] GOstats and htmlReport

Loren Engrav engrav at u.washington.edu
Mon Apr 26 03:13:05 CEST 2010


Hi

Have GOstats up and see

> GOstatsSummary01 <- summary(GOstatsOver01, htmlLinks="true")

> class(GOstatsSummary01)
[1] "data.frame"

> htmlReport(GOstatsSummary01, file="GOstatsSummary01.html")
Error in function (classes, fdef, mtable)  :
  unable to find an inherited method for function "htmlReport", for
signature "data.frame"

What am I missing please?

Thank you
=================

> sessionInfo()
R version 2.11.0 (2010-04-22)
x86_64-apple-darwin9.8.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods
base     

other attached packages:
 [1] SparseM_0.85         RBGL_1.24.0          Rgraphviz_1.26.0
xtable_1.5-6         RColorBrewer_1.0-2   GOstats_2.14.0       graph_1.26.0
Category_2.14.0    
 [9] genefilter_1.30.0    annotate_1.26.0      GO.db_2.4.1
hgu133plus2.db_2.4.1 org.Hs.eg.db_2.4.1   RSQLite_0.8-4        DBI_0.2-5
AnnotationDbi_1.10.0
[17] ALL_1.4.7            Biobase_2.8.0

loaded via a namespace (and not attached):
[1] GSEABase_1.10.0 splines_2.11.0  survival_2.35-8 tools_2.11.0
XML_2.8-1



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