[BioC] GOstats and htmlReport

[Seth Falcon]

Hi Loren,

On 4/25/10 6:13 PM, Loren Engrav wrote:
> Have GOstats up and see
> 
>> GOstatsSummary01 <- summary(GOstatsOver01, htmlLinks="true")
> 
>> class(GOstatsSummary01)
> [1] "data.frame"
> 
>> htmlReport(GOstatsSummary01, file="GOstatsSummary01.html")
> Error in function (classes, fdef, mtable)  :
>   unable to find an inherited method for function "htmlReport", for
> signature "data.frame"
> 
> What am I missing please?

The documentation? :-)

htmlReport is expecting a HyperGResult object.  So I think you should be
able to call:

  htmlReport(GOstatsOver01).

I can see how you may have been misled by the docs, which say:

> htmlReport writes an HTML version of the table produced by the
>           ‘summary’ method.

But the next sentence is:

>  The first argument should be a
>           ‘HyperGResult’ instance (or subclass).

+ seth