[BioC] installation of Rgraphviz
Yanwei Tan
Tan at nbio.uni-heidelberg.de
Fri Apr 9 02:18:30 CEST 2010
Dear all,
I am writing to consult everyone about installing package Rgraphviz on
Mac 10.5.8. Here I met a problem of install. Following is the commands:
> source("http://bioconductor.org/biocLite.R")
> biocLite("Rgraphviz")
Using R version 2.10.1, biocinstall version 2.5.10.
Installing Bioconductor version 2.5 packages:
[1] "Rgraphviz"
Please wait...
Warning: unable to access index for repository
http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.10
trying URL
'http://www.bioconductor.org/packages/2.5/bioc/bin/macosx/leopard/contrib/2.10/Rgraphviz_1.24.0.tgz'
Content type 'application/x-gzip' length 800621 bytes (781 Kb)
opened URL
==================================================
downloaded 781 Kb
The downloaded packages are in
/var/folders/nB/nBQJ07xPEoiIliA+aw-UqU+++TI/-Tmp-//RtmpCLDBJ0/downloaded_packages
> library(Rgraphviz)
Loading required package: graph
Loading required package: grid
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x86_64/Rgraphviz.so':
dlopen(/Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x86_64/Rgraphviz.so,
6): Library not loaded: /usr/local/lib/libgvc.5.dylib
Referenced from:
/Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x86_64/Rgraphviz.so
Reason: image not found
Error: package/namespace load failed for 'Rgraphviz'
Does anyone give me some hints about how to install this package? Or
should I try download the package source? Let me know if extra info is
needed. With many thanks in advance!
the session info is:
> sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-apple-darwin9.8.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] grid stats graphics grDevices utils datasets
methods base
other attached packages:
[1] XML_2.6-0 graph_1.24.4
loaded via a namespace (and not attached):
[1] tools_2.10.1
Best regards,
Wei
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