[BioC] installation of Rgraphviz

Yanwei Tan Tan at nbio.uni-heidelberg.de
Fri Apr 9 02:18:30 CEST 2010


Dear all,

I am writing to consult everyone about installing package Rgraphviz on 
Mac 10.5.8. Here I met a problem of install.  Following is the commands:

 > source("http://bioconductor.org/biocLite.R")
 >     biocLite("Rgraphviz")
Using R version 2.10.1, biocinstall version 2.5.10.
Installing Bioconductor version 2.5 packages:
[1] "Rgraphviz"
Please wait...

Warning: unable to access index for repository 
http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.10
trying URL 
'http://www.bioconductor.org/packages/2.5/bioc/bin/macosx/leopard/contrib/2.10/Rgraphviz_1.24.0.tgz'
Content type 'application/x-gzip' length 800621 bytes (781 Kb)
opened URL
==================================================
downloaded 781 Kb


The downloaded packages are in
     
/var/folders/nB/nBQJ07xPEoiIliA+aw-UqU+++TI/-Tmp-//RtmpCLDBJ0/downloaded_packages
 > library(Rgraphviz)
Loading required package: graph
Loading required package: grid
Error in dyn.load(file, DLLpath = DLLpath, ...) :
   unable to load shared library 
'/Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x86_64/Rgraphviz.so':
   
dlopen(/Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x86_64/Rgraphviz.so, 
6): Library not loaded: /usr/local/lib/libgvc.5.dylib
   Referenced from: 
/Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x86_64/Rgraphviz.so
   Reason: image not found
Error: package/namespace load failed for 'Rgraphviz'

Does anyone give me some hints about how to install this package?  Or 
should I try download the package source? Let me know if extra info is 
needed. With many thanks in advance!

the session info is:
 > sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-apple-darwin9.8.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  
methods   base

other attached packages:
[1] XML_2.6-0    graph_1.24.4

loaded via a namespace (and not attached):
[1] tools_2.10.1


Best regards,
Wei



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