[BioC] CDF for Cytogenetics_Array

[Benilton Carvalho]

Using the oligo package, you can import the data from the Cytogenetics
arrays (it should be able to download/install the required annotation
package, but you can download it directly from
http://www.bioconductor.org/packages/release/data/annotation/html/pd.cytogenetics.array.html
).

I don't have any workflow specific for the cyto chip yet, but this
should suffice for you to import data and use it in combination with
other BioC packages that you may find relevant.

b

On Tue, Apr 27, 2010 at 12:39 PM, Wolfgang Huber <whuber at embl.de> wrote:
> Lenka Radova scripsit 27/04/10 13:28:
>>
>> Hi,
>> I have a problem with new Cytogenetics Array from Affymetrix. I have
>> original Affy .cdf file from web, but I´m not able to create a cdf-package
>> using make.cdf.package.
>> Thanks for any help. Lenka
>
> Dear Lenka
>
> you will increase your chances of getting a useful answer by asking a useful
> question. You might have a look at the posting guide
> http://www.bioconductor.org/docs/postingGuide.html
> in order to find out how to do so.
>
> One particularly important point is:
> "If possible, send a simple and reproducible example along with the output
> of sessionInfo(). If the example produces an error, also provide the error
> message and the output of traceback()."
>
> Wolfgang Huber
> EMBL
> http://www.embl.de/research/units/genome_biology/huber
>
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