[BioC] Problems finding a matching R annotation file...

[Marc Carlson]

Hi Nick,

If you are having a hard time finding an annotation package that is
exactly what you used for the experiment, you can also just generate
one.  Just follow the SQLForge vignette from the AnnotationDbi package. 
You can find this here:

http://www.bioconductor.org/packages/release/bioc/html/AnnotationDbi.html

Once you have generated the package,  you can just build and install it
as any other R package.

Let me know if you have further questions,


  Marc



On 04/09/2010 07:50 AM, Nick Schurch wrote:
> Hi,
>
> I'm doing some analysis of a set of Illumina  MouseWG-6 v2 beadchip
> microarrays with bioconductor, but I'm hainvg some problems finding an
> R annotation file that matches this array. Could someone tell me what
> the right package to use with these arrays is?
>
> I've tried using the "illuminaMousev2BeadID.db" package (which seems
> like it should be the right one) but the datafile has some 'ProbeID's
> that aren't in this database (e.g. 3310215).
>
>