[BioC] HTqPCR version and plotCtOverview scaling errors

[Heidi Dvinge]

Hello Mike,

the current HTqPCR version is actually 1.1.4, c.f.
http://www.ebi.ac.uk/bertone/software.html

That's in the R development version, so it'll be automatically installed
if you have R-2.11. Technically it should also run with R-2.10 (at least
it works on my laptop), but since mixing package and R versions is
generally strongly discouraged, doing so is at your own risk.

I don't recall having made any changes to plotCtOverview though. Can you
perhaps send the exact command you used?

Regards
\Heidi

> Greetings
>
> I have a problem with the axis scale for the main bar being different
> than that for the error bars, i.e., the error bars don't line up over
> the signal bars. I was checking this list for this problem and saw
> that HTqPCR release version is apparently up to version 1.1.0 whereas
> the bioconductor site shows 1.0.0. Maybe the new release would fix the
> problem, but where would I get it? Updating didn't change the version.
> I also am getting main bars of the form SD_myGroups, which I assume is
> standard deviation. Can I turn this off?
>
> Thanks
>
> Mike
>
> R version 2.10.1 (2009-12-14)
> i386-apple-darwin9.8.0
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] HTqPCR_1.0.0       limma_3.2.3        RColorBrewer_1.0-2
> Biobase_2.6.1
>
> loaded via a namespace (and not attached):
> [1] affy_1.24.2          affyio_1.14.0        gdata_2.7.1
> gplots_2.7.4         gtools_2.6.1         preprocessCore_1.8.0
> [7] tools_2.10.1
>
>
> Michael Muratet, Ph.D.
> Senior Scientist
> HudsonAlpha Institute for Biotechnology
> mmuratet at hudsonalpha.org
> (256) 327-0473 (p)
> (256) 327-0966 (f)
>
> Room 4005
> 601 Genome Way
> Huntsville, Alabama 35806
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>