[BioC] Annotation of orthologs

[James W. MacDonald]

Also see here:

http://article.gmane.org/gmane.science.biology.informatics.conductor/28014/match=inparanoid

Joern Toedling wrote:
> Hi Nick,
> 
> this can be done with the biomaRt package. Have a look at the function getLDS.
> The vignette of biomaRt includes one example of using this function (Task 11).
> You may need to translate your probe identifiers to mouse entrezgene or
> Ensembl IDs in order to use this function.
> 
> Regards,
> Joern
> 
> On Fri, 30 Apr 2010 14:14:11 +0100, Nick Schurch wrote
>> Hi all,
>>
>> I have a bunch of probes identified from a mouse microarray 
>> experiment that I want to get the equivalent human ortholog gene 
>> names (or ensembl/entrez ID etc) for. I can't see any fields in the array
>> annotation database that will give me human homolog IDs - is there an
>> easy way to do this?
>>
>> -- 
>> Cheers,
>>
>> Nick Schurch
>>
>>
> 
> ---
> Joern Toedling
> Institut Curie -- U900
> 26 rue d'Ulm, 75005 Paris, FRANCE
> Tel. +33 (0)156246927
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826
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