[BioC] rMAT tutorial. Data file too large?

[Droit Arnaud]

Hi Patrcik,

Could you try with a smallest data set and gives me feed back.
Thanks

Arnaud.


On 10-04-27 1:19 PM, "Patrick Schorderet" <patrick.schorderet at epfl.ch> wrote:



Hello,

I have rMAT installed and can access the data as well as load it. My R
'seems' to crash once I launch the
ERnorm<-NormalizeProbes(ER, method="PairBinned",robust=TRUE)
it takes up ca. 95%CPU for a very long time (I let it run for about
45' and then decided to stop it) with a "R (not responding)" message
in my Force Quit Application. Maybe my system is not powerfull enough?
Did anybody manage to run this on my kind of machine (Mac OSX
(10.5.8); 2.4 Ghz Intel Core 2 Duo; 2Gb 1067 Mhz DDR3)?
Thanks for any additional help...

Patrick



On 27 avr. , at 7:11 PM, Droit Arnaud wrote:

> Hi Patrick,
>
> When rMAT cashes during the installation or during the processing ?
>
> Thanks
>
> Arnaud.
>
>
>
> On 10-04-27 12:47 PM, "Patrick Schorderet"
> <patrick.schorderet at epfl.ch> wrote:
>
>
>
>
> Sorry for the lack of precision in my previous post. What I meant by
> 'crashes' is that in my Force Quit Application, I have a little "(not
> responding)" next to my R.
> I have tried to work with R64 but this doesn't help either. Am I
> really gonna have to buy a new computer...?
> Thanks for the help,
>
> Patrick
>
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