January 2009 Archives by date

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Starting: Sun Jan 4 12:11:17 CET 2009
Ending: Sat Jan 31 14:55:38 CET 2009
Messages: 400

• [BioC] normalizeWithArray with method of "control" in limma package   Leon Yee
• [BioC] Possible bug in `readPositionalInfo` function of 'snapCGH' package?   Zhi-Qiang Ye
• [BioC] Seeking help to remove control spots in single channel normalization   Prashantha Hebbar Kiradi [MU-MLSC]
• [BioC] Seeking help to remove control spots in single channel normalization   Leon Yee
• [BioC] Help with loading newly created custom annotation db into R session   Ochsner, Scott A
• [BioC] Help with loading newly created custom annotation db into R session   James W. MacDonald
• [BioC] Does any one know a package that allow command line dChip normalization with a specific median array?   Li, Aiguo (NIH/NCI) [E]
• [BioC] Masking of limma objects by beadarray when loading arrayQualityMetrics   Marcus Davy
• [BioC] affylmGUI segfault on "pd.ragene.1.0.st.v1"   Harry Mangalam
• [BioC] normalizeWithArray with method of "control" in limma package   Gordon K Smyth
• [BioC] Reading Hapmap files   Basu, Analabha
• [BioC] Does any one know a package that allow command line dChip normalization with a specific median array?   Henrik Bengtsson
• [BioC] Fwd: RMA error in cdf environment with removed probes (Yeast2)   Omri Yahel
• [BioC] Reading Hapmap files   Vincent Carey
• [BioC] how to calcute the hypergeometric probability with R?   jiabao xu
• [BioC] how to calcute the hypergeometric probability with R?   Jitao David Zhang
• [BioC] how to calcute the hypergeometric probability with R?   Jitao David Zhang
• [BioC] affylmGUI segfault on "pd.ragene.1.0.st.v1"   Wolfgang Huber
• [BioC] Masking of limma objects by beadarray when loading arrayQualityMetrics   Wolfgang Huber
• [BioC] Affinity propagation clustering in R   Peder Worning
• [BioC] maQualityPlots function   Priscila Grynberg
• [BioC] Image function   Priscila Grynberg
• [BioC] Affinity propagation clustering in R   Laurent Gautier
• [BioC] Image function   Priscila Grynberg
• [BioC] Image function   Joern Toedling
• [BioC] Affinity propagation clustering in R   Laurent Gautier
• [BioC] affylmGUI segfault on "pd.ragene.1.0.st.v1"   James W. MacDonald
• [BioC] GenomeGraphs error   Droit Arnaud
• [BioC] affylmGUI segfault on "pd.ragene.1.0.st.v1"   Matt Settles
• [BioC] affylmGUI segfault on "pd.ragene.1.0.st.v1"   James W. MacDonald
• [BioC] affylmGUI segfault on "pd.ragene.1.0.st.v1"   Matt Settles
• [BioC] Anetta und ihre Megaboobs   Julietta
• [BioC] Reminder: Intermediate BioC Course 21-23 Jan 09   Patrick Aboyoun
• [BioC] SemSim returns Lin similiarity greater than 1 (01-06-2009).   dyu at purdue.edu
• [BioC] affylmGUI segfault on "pd.ragene.1.0.st.v1"   James W. MacDonald
• [BioC] GenomeGraphs error   michael watson (IAH-C)
• [BioC] SemSim returns Lin similiarity greater than 1 (01-06-2009).   Hervé Pagès
• [BioC] maQualityPlots function   Hervé Pagès
• [BioC] sequences seemed to be not correctly cataloged in package "pd.genomewidesnp.6"   LiGang
• [BioC] affylmGUI segfault on "pd.ragene.1.0.st.v1"   Keith Satterley
• [BioC] sequences seemed to be not correctly cataloged in package "pd.genomewidesnp.6"   Vincent Carey
• [BioC] NEW deadline - Talk & Poster Call - qPCR 2009 Event   NEW deadline - Talk & Poster Call - qPCR 2009 Event
• [BioC] Masking of limma objects by beadarray when loading arrayQualityMetrics   Mark Dunning
• [BioC] OT: R in NYTimes..!   Harry Mangalam
• [BioC] roc50   Peter Robinson
• [BioC] Help with loading newly created custom annotation db into R session   Ochsner, Scott A
• [BioC] how can I apply a function to each element of a GeneSetCollection (GSEABase)   burak kutlu
• [BioC] how can I apply a function to each element of a GeneSetCollection (GSEABase)   Francois Pepin
• [BioC] how can I apply a function to each element of a GeneSetCollection (GSEABase)   Martin Morgan
• [BioC] Keine letzte Mahnung   Insider Trades AG [Aktien News]
• [BioC] Aroma breaks when reading >2 Agilent 44k custom arrays   Daniel Klevebring
• [BioC] Unable to load Ruuid in R 2.8.1   Daniel Klevebring
• [BioC] roc50   Richard Pearson
• [BioC] Seeking help to remove control spots in single channel normalization   Prashantha Hebbar
• [BioC] Seeking help to remove control spots in single channel normalization   Leon Yee
• [BioC] GenomeGraphs error   Wolfgang Huber
• [BioC] Seeking help to remove control spots in single channel normalization   Jenny Drnevich
• [BioC] Annotation and expression detection of Illumina microRNA expression prolifing panels   Jitao David Zhang
• [BioC] lmFit function   Priscila Grynberg
• [BioC] lmFit function   Jenny Drnevich
• [BioC] lmFit function   Priscila Grynberg
• [BioC] post help   Alon Ben-Ari
• [BioC] simpleaffy with hgu133plus2   dorothyc
• [BioC] basic question regarding biomaRt   Elizabeth Purdom
• [BioC] fbat question   Hu, Donglei
• [BioC] Problem with p-values calculated by eBayes   Chen, Zhuoxun
• [BioC] basic question regarding biomaRt   Rhoda Kinsella
• [BioC] BioC problem with result.summary in simpleaffy   Marietta Herrmann
• [BioC] fbat question   weiliang Qiu
• [BioC] Problem with p-values calculated by eBayes   Chen, Zhuoxun
• [BioC] Problem with p-values calculated by eBayes--corrected format   Chen, Zhuoxun
• [BioC] Problem with p-values calculated by eBayes--corrected format   Kasper Daniel Hansen
• [BioC] problem getting biotype in biomaRt   Elizabeth Purdom
• [BioC] basic question regarding biomaRt   Elizabeth Purdom
• [BioC] interaction analysis   phguardiol at aol.com
• [BioC] Request for the assistance to use MEDME   Prashantha Hebbar
• [BioC] Installing "lumi" package failure   Gundala Viswanath
• [BioC] synergy / interaction analysis between gene transcript & correlation / what package to do this ?   Philippe Guardiola
• [BioC] Installing "lumi" package failure   toedling at ebi.ac.uk
• [BioC] Request for the assistance to use MEDME   Mattia Pelizzola
• [BioC] Geile T.eens geleckt und gef-ickt   Lynelle
• [BioC] Error in getClass(Class, where = topenv(parent.frame())) : "AnnotatedDataFrame" is not a defined class   Sally
• [BioC] Error in getClass(Class, where = topenv(parent.frame())) : "AnnotatedDataFrame" is not a defined class   Martin Morgan
• [BioC] how to use limma function duplicateCorrelation() in Separate Channel Analysis of Two-Color Data   Kun Zhang
• [BioC] Filtering before differential expression analysis of microarrays - New paper out   Daniel Brewer
• [BioC] Problem with p-values calculated by eBayes--corrected format   Mayer, Claus-Dieter
• [BioC] BioC problem with result.summary in simpleaffy   James W. MacDonald
• [BioC] Filtering before differential expression analysis of microarrays - New paper out   James W. MacDonald
• [BioC] Baseline selection methods used in normalize.scaling?   shuli kang
• [BioC] RinGO problem   Jianping Jin
• [BioC] Probe-level rma vs. gene-level rma in "Affy"   Skewes,Aaron
• [BioC] RinGO problem   Joern Toedling
• [BioC] Probe-level rma vs. gene-level rma in "Affy"   balag Ganesan
• [BioC] RinGO problem   Jianping Jin
• [BioC] duplicateCorrelation question   Ochsner, Scott A
• [BioC] Baseline selection methods used in normalize.scaling?   Henrik Bengtsson
• [BioC] RinGO problem   Joern Toedling
• [BioC] Probe-level rma vs. gene-level rma in "Affy"   James W. MacDonald
• [BioC] Probe-level rma vs. gene-level rma in "Affy"   Skewes,Aaron
• [BioC] Amazon.co.uk: Your Account Information   Amazon.co.uk
• [BioC] problem getting biotype in biomaRt   steffen at stat.Berkeley.EDU
• [BioC] RinGO problem   Jianping Jin
• [BioC] biomArt problems   steffen at stat.Berkeley.EDU
• [BioC] Luminex Data Analysis   Samuel Pine
• [BioC] how to use limma function duplicateCorrelation() in Separate Channel Analysis of Two-Color Data   Gordon K Smyth
• [BioC] reading Agilent Feature Extraction files with Limma   Remi Gagne
• [BioC] Baseline selection methods used in normalize.scaling?   Ben Bolstad
• [BioC] Baseline selection methods used in normalize.scaling?   shuli kang
• [BioC] Baseline selection methods used in normalize.scaling?   shuli kang
• [BioC] reading Agilent Feature Extraction files with Limma   Axel.Klenk at Actelion.Com
• [BioC] bug in beadarray:::getNegatives   Cei Abreu-Goodger
• [BioC] problem getting biotype in biomaRt   Rhoda Kinsella
• [BioC] problem getting biotype in biomaRt   Rhoda Kinsella
• [BioC] Solexa fastq files and BLAT   Daniel Brewer
• [BioC] Solexa fastq files and BLAT   Sean Davis
• [BioC] Question on limma design matrix   Sim, Fraser
• [BioC] Solexa fastq files and BLAT   Martin Morgan
• [BioC] RinGO problem   Joern Toedling
• [BioC] Filtering before differential expression analysis of microarrays - New paper out (James W. MacDonald)   Sherosha Raj
• [BioC] Filtering before differential expression analysis of microarrays - New paper out (James W. MacDonald)   Jenny Drnevich
• [BioC] Filtering before differential expression analysis of microarrays - New paper out (James W. MacDonald)   Sherosha Raj
• [BioC] Filtering before differential expression analysis of microarrays - New paper out (James W. MacDonald)   Jenny Drnevich
• [BioC] Filtering before differential expression analysis of microarrays - New paper out (James W. MacDonald)   Sherosha Raj
• [BioC] Course filled: Intermediate BioC Course 21-23 Jan 09   Patrick Aboyoun
• [BioC] GOstats: hyperGTest for KEGG with org.Sc.sgd.db   Paul Evans
• [BioC] (no subject)   Gordon K Smyth
• [BioC] Filtering before differential expression analysis of microarrays - New paper out   Gordon Smyth
• [BioC] problem getting biotype in biomaRt   steffen at stat.Berkeley.EDU
• [BioC] Filtering before differential expression analysis of microarrays - New paper out   Steve Lianoglou
• [BioC] multiple locations for probeset in hgu133plus2CHRLOC vs. UCSC PSL data   Robert Gentleman
• [BioC] Filtering before differential expression analysis of microarrays - New paper out   James W. MacDonald
• [BioC] Filtering before differential expression analysis of microarrays - New paper out   Steve Lianoglou
• [BioC] Filtering before differential expression analysis of microarrays - New paper out   Daniel Brewer
• [BioC] SAM warning   elliott harrison
• [BioC] ** job posting **   Tobias Straub
• [BioC] Creating Affymetrix CDF files   Mehmet Somel
• [BioC] question on GSEAlm   Mark Kimpel
• [BioC] Filtering before differential analysis   Sally
• [BioC] Filtering before differential expression analysis of microarrays - New paper out   Robert Gentleman
• [BioC] Creating Affymetrix CDF files   Kasper Daniel Hansen
• [BioC] Creating Affymetrix CDF files   Mehmet Somel
• [BioC] reference argument in limma factorial design   Wei Xu
• [BioC] Two colour arrays - looking at just cy3 or cy5   Yogi Sundaravadanam
• [BioC] Filtering before differential analysis   Jenny Drnevich
• [BioC] error with ontoCompare (goTools)   Wolfgang Raffelsberger
• [BioC] GCRMA: error / warning   Hooiveld, Guido
• [BioC] error with ontoCompare (goTools)   Wolfgang Raffelsberger
• [BioC] error with ontoCompare (goTools)   Martin Morgan
• [BioC] Overview of "Available Bioconductor Software for Processing Oligonucleotide Arrays" at bioconductor.org   Patrick Aboyoun
• [BioC] Combine hgu133a&b and hgu133plus2   Alex Sanchez
• [BioC] reference argument in limma factorial design   Gordon K Smyth
• [BioC] reference argument in limma factorial design   Naomi Altman
• [BioC] error with ontoCompare (goTools)   Alex Sanchez
• [BioC] problems with marray and gpr files   Jörg
• [BioC] problems with marray and gpr files   Martin Morgan
• [BioC] Combine hgu133a&b and hgu133plus2   Charles Danko
• [BioC] Exceptionnel, ce produit est gratuit   RuedelaMer par Voiles News
• [BioC] Call for abstracts: LASR 2009 - Statistical Tools for Challenges in Bioinformatics   A Gusnanto
• [BioC] Filtering before differential analysis   Jenny Drnevich
• [BioC] |>entists Listing in the USA   Ramiro grist
• [BioC] GCRMA: error / warning   Zhijin Wu
• [BioC] Fin du Jeu - Liste des gagnants   L'Esprit Sport
• [BioC] reference argument in limma factorial design   Wei Xu
• [BioC] error with ontoCompare (goTools)   Alex Sanchez
• [BioC] Creating Affymetrix CDF files   Srinivas Iyyer
• [BioC] reference argument in limma factorial design   Naomi Altman
• [BioC] bug report for GenomeGraphs   steffen at stat.Berkeley.EDU
• [BioC] Creating Affymetrix CDF files   Kasper Daniel Hansen
• [BioC] fail combineAffyBatch for many files   Oura Tomonori
• [BioC] Problems with EBImage installation   cristina della beffa
• [BioC] getGEO without platform?   Cei Abreu-Goodger
• [BioC] Job offer at EMBL Heidelberg   delhomme at embl.de
• [BioC] Problems with EBImage installation   Gregoire Pau
• [BioC] getGEO without platform?   Sean Davis
• [BioC] Problems with EBImage installation   cristina della beffa
• [BioC] Expressionset from ArrayExpress processed data   Yovanny Izquierdo Núñez
• [BioC] Expressionset from ArrayExpress processed data   Martin Morgan
• [BioC] One class data   John Antonydas Gaspar
• [BioC] One class data   Naomi Altman
• [BioC] Genome position to miRNA or gene name   Daniel Brewer
• [BioC] One class data   Sean Davis
• [BioC] One class data   Naomi Altman
• [BioC] Genome position to miRNA or gene name   Steve Lianoglou
• [BioC] Expressionset from ArrayExpress processed data   Yovanny Izquierdo Núñez
• [BioC] Normalizing after MAS 5.0   Michal Blazejczyk
• [BioC] Expressionset from ArrayExpress processed data   Martin Morgan
• [BioC] Is there any way to get M-values in topTable?   Prashantha Hebbar
• [BioC] Expressionset from ArrayExpress processed data   Misha Kapushesky
• [BioC] Expressionset from ArrayExpress processed data   audrey at ebi.ac.uk
• [BioC] getGEO without platform?   Cei Abreu-Goodger
• [BioC] full Professor position in bioinformatics in Innsbruck, Austria   Johannes Rainer
• [BioC] GSEA to discover co-regulated genes   Paul Geeleher
• [BioC] getGEO without platform?   Sean Davis
• [BioC] Normalizing after MAS 5.0   James W. MacDonald
• [BioC] Is there any way to get M-values in topTable?   James W. MacDonald
• [BioC] GWAS power calculations/joint analysis   Jussi Paananen
• [BioC] GWAS power calculations/joint analysis   Juan Pedro Steibel
• [BioC] GSEA to discover co-regulated genes   Vincent Carey
• [BioC] Affymetrix expression values using threestep?   Javier Pérez Florido
• [BioC] unlock your account   Westpac
• [BioC] Normalizing after MAS 5.0   Michal Blazejczyk
• [BioC] Rgraphviz crashes R (Vista x64)   Sim, Fraser
• [BioC] Bead level data from Illumina Sentrix Whole Genome Expression BeadChips   Wei Shi
• [BioC] introduction - flowCore user   Steve Lauriault
• [BioC] Normalizing after MAS 5.0   Naomi Altman
• [BioC] Genome position to miRNA or gene name   Martin Morgan
• [BioC] introduction - flowCore user   Nolwenn Le Meur
• [BioC] Problem with package "GenomeGraphs"   Philippe Thomas
• [BioC] Normalizing after MAS 5.0   James W. MacDonald
• [BioC] introduction - flowCore user   Steve Lauriault
• [BioC] Limma - which colors are allowable for SpotTypes?   Jabez Wilson
• [BioC] Problem in reading JPEG files for CGH arrays   Alberto Goldoni
• [BioC] Use of duplicateCorrelation   Erika Melissari
• [BioC] Limma - which colors are allowable for SpotTypes?   Philipp Pagel
• [BioC] Inf when using duplicateCorrelation   Ingrid H. G. Østensen
• [BioC] Inf when using duplicateCorrelation - now with session info   Ingrid H. G. Østensen
• [BioC] Problem in reading JPEG files for CGH arrays   Sean Davis
• [BioC] R: Problem in reading JPEG files for CGH arrays   Alberto Goldoni
• [BioC] R: Problem in reading JPEG files for CGH arrays   Sean Davis
• [BioC] chipAlongChrom problem in Ringo   Jianping Jin
• [BioC] chipAlongChrom problem in Ringo   Joern Toedling
• [BioC] chipAlongChrom problem in Ringo   Jianping Jin
• [BioC] chipAlongChrom problem in Ringo   Joern Toedling
• [BioC] R: Problem in reading JPEG files for CGH arrays   Robert Gentleman
• [BioC] chipAlongChrom problem in Ringo   Jianping Jin
• [BioC] EBImage installation problem   Sharon
• [BioC] Loading the PGSEA package.   Marcus Gry
• [BioC] Loading the PGSEA package.   Robert Gentleman
• [BioC] Loading the PGSEA package.   Patrick Aboyoun
• [BioC] Help: LIMMA-decideTests and lfc option   Sherosha Raj
• [BioC] introduction - flowCore user   Nolwenn Le Meur
• [BioC] Affymetrix preprocessing, MAS5 vs. RMA   Dozmorov, Mikhail G. (HSC)
• [BioC] Affymetrix preprocessing, MAS5 vs. RMA   Sean Davis
• [BioC] Affymetrix preprocessing, MAS5 vs. RMA   Kasper Daniel Hansen
• [BioC] introduction - flowCore user   Steve Lauriault
• [BioC] introduction - flowCore user   Heidi Dvinge
• [BioC] Analysis of Time-Series Microarray Data   Paco Recca
• [BioC] Genome position to miRNA or gene name   Steve Lianoglou
• [BioC] introduction - flowCore user   Deepayan Sarkar
• [BioC] introduction - flowCore user   Steve Lauriault
• [BioC] introduction - flowCore user   Deepayan Sarkar
• [BioC] Payment to Online_Script_UK is Complete   Abbey National Plc
• [BioC] Analysis of Time-Series Microarray Data   Ana Conesa
• [BioC] chipAlongChrom problem in Ringo   Joern Toedling
• [BioC] PGSEA and Ruuid   Daniel Klevebring
• [BioC] Adding names to a IRanges object   Daniel Brewer
• [BioC] Affymetrix preprocessing, MAS5 vs. RMA   Daniel Brewer
• [BioC] Help for ANOVA test   John Antonydas Gaspar
• [BioC] Summarize with RMA using Alternative CDF   Arteaga Salas, Jose M
• [BioC] Summarize with RMA using Alternative CDF   Sean Davis
• [BioC] Summarize with RMA using Alternative CDF   Laurent Gautier
• [BioC] Loading the PGSEA package.   Dykema, Karl
• [BioC] Summarize with RMA using Alternative CDF   Henrik Bengtsson
• [BioC] Help using biomaRt   john seers (IFR)
• [BioC] Adding names to a IRanges object   Patrick Aboyoun
• [BioC] Help using biomaRt   Steve Lianoglou
• [BioC] Reference Management for Busy Researchers   Anderson Brown
• [BioC] Limma: design matrix   Yolande Tra
• [BioC] Limma: design matrix   Naomi Altman
• [BioC] introduction - flowCore user   Stevan Lauriault
• [BioC] About GEO submission of Illumina data   Pan Du
• [BioC] PLPE error   Dennis.Burian at faa.gov
• [BioC] Help: LIMMA-decideTests and lfc option   Sherosha Raj
• [BioC] Inf when using duplicateCorrelation   Gordon K Smyth
• [BioC] Use of duplicateCorrelation   Gordon K Smyth
• [BioC] Rassiges Babe beim geilen Tittenf-ick   Carol
• [BioC] Help: LIMMA-decideTests and lfc option   James MacDonald
• [BioC] IRanges: Trying to cut overlapping intervals into pieces   Elizabeth Purdom
• [BioC] IRanges: Trying to cut overlapping intervals into pieces   Michael Lawrence
• [BioC] Adding names to a IRanges object   Michael Lawrence
• [BioC] Help: LIMMA-decideTests and lfc option   Sherosha Raj
• [BioC] Importing OSX directory into read.flowSet()   Steve Lauriault
• [BioC] IRanges: Trying to cut overlapping intervals into pieces   Elizabeth Purdom
• [BioC] IRanges: Trying to cut overlapping intervals into pieces   Elizabeth Purdom
• [BioC] IRanges: Trying to cut overlapping intervals into pieces   Elizabeth Purdom
• [BioC] Help on log issue   Prashantha Hebbar
• [BioC] JoVE: New Video Articles on Biomedical Research Techniques   Moshe Pritsker, Editor, JoVE
• [BioC] Help on log issue   Simon Anders
• [BioC] LIMMA Error Message:Error in new("AnnotatedDataFrame", data = phenotypicdata) : trying to generate an object from a virtual class ("AnnotatedDataFrame")   Sally
• [BioC] Limma: design matrix   Yolande Tra
• [BioC] Help using biomaRt   steffen at stat.Berkeley.EDU
• [BioC] LIMMA Error Message:Error in new("AnnotatedDataFrame", data = phenotypicdata) : trying to generate an object from a virtual class ("AnnotatedDataFrame")   Martin Morgan
• [BioC] Help: LIMMA-decideTests and lfc option   Gordon K Smyth
• [BioC] Help using biomaRt   john seers (IFR)
• [BioC] Help using biomaRt   john seers (IFR)
• [BioC] Select an affybatch subset prior to normalization   Javier Pérez Florido
• [BioC] biomaRt and Ensembl probe set filter....   Jesper Ryge
• [BioC] Use of duplicateCorrelation   Erika Melissari
• [BioC] rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call   Paul Shannon
• [BioC] Help using biomaRt   john seers (IFR)
• [BioC] biomaRt and Ensembl probe set filter....   James W. MacDonald
• [BioC] biomaRt and Ensembl probe set filter....   Cei Abreu-Goodger
• [BioC] biomaRt and Ensembl probe set filter....   Jesper Ryge
• [BioC] biomaRt and Ensembl probe set filter....   Jesper Ryge
• [BioC] biomaRt and Ensembl probe set filter....   Laurent Gautier
• [BioC] Help: LIMMA-decideTests and lfc option   Sherosha Raj
• [BioC] adjusting for batch effects-does normalising work?   Sherosha Raj
• [BioC] BiomaRt and extracting genomic sequence   RS Illingworth
• [BioC] use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis   Dan Strumpf
• [BioC] gene expression matrix PCA with categorical factors   Sherosha Raj
• [BioC] confused about mget with u133x3p.db and u133x3pALIAS2PROBE   Andrew Yee
• [BioC] confused about mget with u133x3p.db and u133x3pALIAS2PROBE   Marc Carlson
• [BioC] Limma: design matrix   Naomi Altman
• [BioC] Use of duplicateCorrelation   Gordon K Smyth
• [BioC] confused about mget with u133x3p.db and u133x3pALIAS2PROBE   Andrew Yee
• [BioC] Limma: design matrix   Yolande Tra
• [BioC] use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis   Michal Okoniewski
• [BioC] readPgf and writePgf function in affxparser package   shirley zhang
• [BioC] use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis   James W. MacDonald
• [BioC] chipAlongChrom problem in Ringo   Joern Toedling
• [BioC] retrieve genomic coordinates of FASTA file   João Fadista
• [BioC] use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis   Dan Strumpf
• [BioC] chipAlongChrom problem in Ringo   Jianping Jin
• [BioC] retrieve genomic coordinates of FASTA file   James W. MacDonald
• [BioC] use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis   Dan Strumpf
• [BioC] Error in BioMart and wormbase   Vinuela, Ana
• [BioC] BiomaRt error when trying to get exon location info   Daniel Brewer
• [BioC] confused about mget with u133x3p.db and u133x3pALIAS2PROBE   Marc Carlson
• [BioC] comparing multiple individual genomes in bioc?   Paul Shannon
• [BioC] Principal component analysis   Paco Recca
• [BioC] use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis   cstrato
• [BioC] Re : Principal component analysis   Wolfgang RAFFELSBERGER
• [BioC] Principal component analysis   anna freni sterrantino
• [BioC] use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis   Dan Strumpf
• [BioC] chipAlongChrom problem in Ringo   Jianping Jin
• [BioC] comparing multiple individual genomes in bioc?   Kasper Daniel Hansen
• [BioC] comparing multiple individual genomes in bioc?   Martin Morgan
• [BioC] Medical Doctor Listing   Arias P Warren
• [BioC] Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays   dorothyc
• [BioC] Boston Bioconductor Training, 23-24 Feb 2009   Vincent Carey
• [BioC] Error in BioMart and wormbase   steffen at stat.Berkeley.EDU
• [BioC] BiomaRt error when trying to get exon location info   steffen at stat.Berkeley.EDU
• [BioC] BiomaRt and extracting genomic sequence   steffen at stat.Berkeley.EDU
• [BioC] BiomaRt and extracting genomic sequence   Rob Illingworth
• [BioC] Error in BioMart and wormbase   Vinuela, Ana
• [BioC] use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis   Michal Okoniewski
• [BioC] Help using biomaRt   john seers (IFR)
• [BioC] Newbie Illumina Probe Annotation (beadarray) Problem   LeeH
• [BioC] BiomaRt error when trying to get exon location info   Daniel Brewer
• [BioC] Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays   Maria Stalteri
• [BioC] rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call   Paul Shannon
• [BioC] BiomaRt error when trying to get exon location info   john seers (IFR)
• [BioC] Help using biomaRt   James W. MacDonald
• [BioC] Problem with RMA using pdInfoBuilder, oligo and limma   Anne-Marie Madore
• [BioC] Problem with Annotation of Mouse4302.db in simpleaffy   Marietta Herrmann
• [BioC] Select an affybatch subset prior to normalization   Jenny Drnevich
• [BioC] D.entists Listing in America   upshot Whalen
• [BioC] Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays   Marc Carlson
• [BioC] Illumina Chip-Seq software   Lana Schaffer
• [BioC] Problem with Annotation of Mouse4302.db in simpleaffy   James W. MacDonald
• [BioC] MAS5 / Affy error   Anthony DiBiase
• [BioC] Problem with RMA using pdInfoBuilder, oligo and limma   Marc Carlson
• [BioC] Newbie Illumina Probe Annotation (beadarray) Problem   Wei Shi
• [BioC] flowCore - cloud() and lapply   Steve Lauriault
• [BioC] flowCore - cloud() and lapply   Nishant Gopalakrishnan
• [BioC] Problem with RMA using pdInfoBuilder, oligo and limma   Anne-Marie Madore
• [BioC] Problem with RMA using pdInfoBuilder, oligo and limma   Anne-Marie Madore
• [BioC] Help using biomaRt   steffen at stat.Berkeley.EDU
• [BioC] IRanges: Trying to cut overlapping intervals into pieces   Hervé Pagès
• [BioC] Limma: Question about extracting 2-channel data   Boris Umylny
• [BioC] Limma: Question about extracting 2-channel data   Axel.Klenk at Actelion.Com
• [BioC] Help using biomaRt   john seers (IFR)
• [BioC] Limma: Question about extracting 2-channel data   James W. MacDonald
• [BioC] flowCore - cloud()   Steve Lauriault
• [BioC] bioconductor for beginners   Giusy Della Gatta
• [BioC] bioconductor for beginners   Marietta Herrmann
• [BioC] creating a flowSet (2.2.1)   Steve Lauriault
• [BioC] creating a flowSet (2.2.1)   Steve Lauriault
• [BioC] Recall: creating a flowSet (2.2.1)   Steve Lauriault
• [BioC] Newbie Illumina Probe Annotation (beadarray) Problem   Priscila Darakjian
• [BioC] flowCore - cloud()   Deepayan Sarkar
• [BioC] Newbie Illumina Probe Annotation (beadarray) Problem   Priscila Darakjian
• [BioC] Newbie Illumina Probe Annotation (beadarray) Problem   Lynn Amon
• [BioC] Newbie Illumina Probe Annotation (beadarray) Problem   Priscila Darakjian
• [BioC] rgl.init error   Steve Lauriault
• [BioC] rgl.init error   Sean Davis
• [BioC] rgl.init error   Kasper Daniel Hansen
• [BioC] GOstats: HyperGTest for KEGG   Paul Evans
• [BioC] fail combineAffyBatch for many files   Wolfgang Huber
• [BioC] GOstats: HyperGTest for KEGG   Marc Carlson
• [BioC] Limma: Question about extracting 2-channel data   Boris Umylny
• [BioC] Limma: Question about extracting 2-channel data   Boris Umylny
• [BioC] IRanges: Trying to cut overlapping intervals into pieces   Hervé Pagès
• [BioC] getSeq human genomic sequences   Tiandao Li
• [BioC] bioconductor for beginners   Paolo Sonego
• [BioC] Limma without eBayes correction   Daniel Brewer
• [BioC] Limma without eBayes correction   Jenny Drnevich
• [BioC] Limma without eBayes correction   James W. MacDonald
• [BioC] FW: Rgraphviz install   June Wong
• [BioC] Limma without eBayes correction   Holger Schwender
• [BioC] Creating annotation packages   Gábor Csárdi
• [BioC] Creating annotation packages   Sean Davis
• [BioC] Creating annotation packages   Gábor Csárdi
• [BioC] getSeq human genomic sequences   Tiandao Li
• [BioC] Heatmap problem   hemant ritturaj
• [BioC] Creating annotation packages   Marc Carlson
• [BioC] Heatmap problem   James W. MacDonald
• [BioC] getSeq human genomic sequences   Hervé Pagès
• [BioC] present/absent on 2-color oligo arrays   Naomi Altman
• [BioC] present/absent on 2-color oligo arrays   Samuel Wuest

Last message date: Sat Jan 31 14:55:38 CET 2009
Archived on: Tue Feb 3 18:04:41 CET 2009

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