[BioC] comparing multiple individual genomes in bioc?

[Paul Shannon]

I am becoming acquainted with the bioc packages helpful in DNA  
sequence analysis.  There is lots of nice stuff.

We (like the rest of the world...) hope to soon have many individual  
human genomes.  We wish to compare them, looking for fine-grained  
variations in intragenic and extragenic regions, for clues to  
phenotypic variety.

Is there support for this kind of analysis in bioc?  If not, is this  
planned or hoped for?

Thanks -

  - Paul Shannon