[BioC] GenomeGraphs error
michael watson (IAH-C)
michael.watson at bbsrc.ac.uk
Wed Jan 7 00:15:30 CET 2009
That is a problem with biomaRt, not GenomeGraphs. I suggest you send the error to the author as something may have changed on the biomart server
From: bioconductor-bounces at stat.math.ethz.ch on behalf of Droit Arnaud
Sent: Tue 06/01/2009 4:08 PM
To: bioconductor at stat.math.ethz.ch
Subject: [BioC] GenomeGraphs error
For many months, I have used the GenomeGraphs package without any problems.
But since a few days, the following code from the documentation :
mart <- useMart("ensembl", dataset = "hsapiens_gene_ensembl")
gene <- makeGene(id = "ENSG00000095203",type = "ensembl_gene_id", biomart = mart)
Gives the following error message :
error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id", :
Number of columns in the query result doesn't equal number of attributes in query. This is probably an internal error, please report.
I have the following version of R on 64 bit : R version 2.8.1 RC (2008-12-20 r47269)
Also, I have installed the release version and development version of GenomeGraphs.
Does anyone know what is the problem ?
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