[BioC] Help for ANOVA test

John Antonydas Gaspar gasparj at uni-koeln.de
Fri Jan 23 12:13:21 CET 2009


Dear Sir/Madam,


I have the following experimental data set.


Control-01
Control-02
Control-03

Ex-1-Test- 01
Ex-1-Test- 02
Ex-1-Test -03


Ex-2-Test-01
Ex-2-Test-02
Ex-2-Test-03

Three samples with biological replicates. I wish to do ANOVA.

Other than using limma package, I wish to do ANOVA with some other package
especially with multtest package. Can I use test="f" option with the function
mt.teststat?.
In case If I can do how can I calculate the p value for the f-test value.

Kindly help me out with this regard,

with kind regards,

antony

-- 
John Antonydas Gaspar,
Phd Student AG: Prof.A.Sachinidis
Institute of Neurophysiology
University of Cologne
Robert-Koch-Str. 39
50931 Cologne/Germany

Tel:  004922125918042
Handy:   004917683142627



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