[BioC] Loading the PGSEA package.

[Robert Gentleman]

Hi Marcus,

On Thu, Jan 22, 2009 at 10:48 AM, Marcus Gry <marcus.gry at genpat.uu.se> wrote:
> Hello mailinglist!
>
> I have a problem loading the PGSEA package using R 2.8.0 on Mac OS X
> 10.5.6.

  2.8.1 is the current release so it might be a good time to update.
  (more below)

>
>  > library(PGSEA)
> Loading required package: AnnotationDbi
> Loading required package: Biobase
> Loading required package: tools
>
> Welcome to Bioconductor
>
>   Vignettes contain introductory material. To view, type
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: Ruuid
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>   unable to load shared library '/Library/Frameworks/R.framework/
> Resources/library/Ruuid/libs/i386/Ruuid.so':
>   dlopen(/Library/Frameworks/R.framework/Resources/library/Ruuid/libs/
> i386/Ruuid.so, 6): Library not loaded: /usr/local/lib/
> libglib-2.0.0.dylib
>   Referenced from: /Library/Frameworks/R.framework/Resources/library/
> Ruuid/libs/i386/Ruuid.so
>   Reason: image not found
> Error: package 'Ruuid' could not be loaded
>  > sessionInfo()
> R version 2.8.0 (2008-10-20)
> i386-apple-darwin8.11.1


  It looks like you do not have Ruuid installed properly.
 library(Ruuid) at the R command prompt? I suspect it fails, and then
you can start by
 reinstalling it.

   best wishes
    Robert


>
> locale:
> en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets
> methods   base
>
> other attached packages:
> [1] AnnotationDbi_1.4.2 Biobase_2.2.1
>
> loaded via a namespace (and not attached):
> [1] DBI_0.2-4     RSQLite_0.7-1
>
>
> I would really appreciate some help in this matter.
>
> Best regards
>
> /Marcus
>        [[alternative HTML version deleted]]
>
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>



-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem at fhcrc.org