[BioC] getGEO without platform?
cei at ebi.ac.uk
Tue Jan 20 12:26:57 CET 2009
I was wondering if there's a way to use getGEO to end up with an
ExpressionSet without platform annotation. Why? I have lots of GEO
entries from which I want to quickly extract the exprs values, and I
don't care about the annotation (and I can always download it later on).
I've been trying:
geo <- getGEO("GSE11899", GSEMatrix=TRUE, AnnotGPL=FALSE)
But for "GSE" ids it seems to ignore the AnnotGPL flag and goes ahead to
download 38.1 Mb (in this case) of text annotation!
R version 2.8.0 (2008-10-20)
attached base packages:
 stats graphics grDevices datasets tools utils methods
other attached packages:
 GEOquery_2.6.0 RCurl_0.93-0 Biobase_2.2.1
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