[BioC] rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call
Paul Shannon
pshannon at systemsbiology.org
Mon Jan 26 14:06:52 CET 2009
I am following the vignette provided by the 1.2.2 rtracklayer package
-- and delighted to find such capabilities in bioc!
When I call, browseGenome(subTargetTrack)
I get this error (with traceback and sessionInfo to follow). Can
anyone help?
- Paul
Error in as.numeric(hgsid) :
cannot coerce type 'externalptr' to vector of type 'double'
> traceback ()
5: browserView(<S4 object of class "ucscSession">, <S4 object of class
"genomeSegment">)
4: browserView(<S4 object of class "ucscSession">, <S4 object of class
"genomeSegment">)
3: do.call("browserView", viewParams)
2: browseGenome(subTargetTrack)
1: browseGenome(subTargetTrack)
> sessionInfo ()
R version 2.8.1 (2008-12-22)
i386-apple-darwin8.11.1
locale:
en_US.US-ASCII/en_US.US-ASCII/C/C/en_US.US-ASCII/en_US.US-ASCII
attached base packages:
[1] splines tools stats graphics grDevices utils
datasets methods base
other attached packages:
[1] rtracklayer_1.2.2 RCurl_0.94-0 org.Hs.eg.db_2.2.6
microRNA_1.0.0 Rlibstree_0.3-1 matchprobes_1.14.1
affy_1.20.2
[8] limma_2.16.4 genefilter_1.22.0 survival_2.34-1
humanStemCell_0.2.0 hgu133plus2.db_2.2.5 RSQLite_0.6-9 DBI_0.2-4
[15] AnnotationDbi_1.4.2 Biobase_2.2.1
loaded via a namespace (and not attached):
[1] Biostrings_2.10.15 IRanges_1.0.9 Matrix_0.999375-18
XML_1.95-2 affyio_1.8.0 annotate_1.20.1
grid_2.8.1
[8] lattice_0.17-17 preprocessCore_1.4.0 rJava_0.5-1
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