[BioC] use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
Dan Strumpf
dstrumpf at uhnresearch.ca
Mon Jan 26 22:17:21 CET 2009
Hello,
I am new to exon array analysis and have used the huex10stv2cdf_1.15.0.tar.gz
package (downloaded from
http://aurora.lbl.gov/static/huex10stv2cdf_1.15.0.tar.gz
)as a cdf source/mapping for processing Human exon array data within 'affy'
package. Processing went smoothly without any error messages. Noticed some
communication about this package in Oct. 2007, and am not clear if results
using it are relaible.
I am interested in processing Human exon array data also with gcRMA and am
wondering if should use the above package or use xps/exonmap/oligo instead?
Would like to know also what are to options for differential expression
analysis equivalent to samr limma or RankProd for paired samples from within
exon array analysis packages or could the preprocessed/normalized data be
exported and used with xps/exonmap/oligo packages.
Thanks,
Dan
More information about the Bioconductor
mailing list