February 2009 Archives by author

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Starting: Sun Feb 1 02:39:16 CET 2009
Ending: Sat Feb 28 09:59:37 CET 2009
Messages: 457

• [BioC] Keep getting warning messages of package 'XYZ' was builtunder R version 2.8.1   michael watson (IAH-C)
• [BioC] Heatmap without using clustering result   michael watson (IAH-C)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Using htmlpage   john seers (IFR)
• [BioC] Adding annotations to fit2   john seers (IFR)
• [BioC] limma - interpreting factorial design   john seers (IFR)
• [BioC] limma - interpreting factorial design   john seers (IFR)
• [BioC] limma - interpreting factorial design   john seers (IFR)
• [BioC] limma - interpreting factorial design   john seers (IFR)
• [BioC] problem regarding runtime of pamr.cv   ALok
• [BioC] problem regarding runtime of pamr.cv   ALok
• [BioC] problem regarding runtime of pamr.cv   ALok
• [BioC] old version of affy package 1.5.8   Patrick Aboyoun
• [BioC] old version of affy package 1.5.8   Patrick Aboyoun
• [BioC] how to modify a Biostrings object   Patrick Aboyoun
• [BioC] how to modify a Biostrings object   Patrick Aboyoun
• [BioC] how to modify a Biostrings object   Patrick Aboyoun
• [BioC] why is the CMA package not available for windows??   Patrick Aboyoun
• [BioC] why is the CMA package not available for windows??   Patrick Aboyoun
• [BioC] memory exhausted for readAligned   Patrick Aboyoun
• [BioC] memory exhausted for readAligned   Patrick Aboyoun
• [BioC] memory exhausted for readAligned   Patrick Aboyoun
• [BioC] BioC 2.2 release update.packages error   Patrick Aboyoun
• [BioC] Keep getting warning messages of package 'XYZ' was built under R version 2.8.1   Patrick Aboyoun
• [BioC] How to install chipseq package   Patrick Aboyoun
• [BioC] script line to multiply a vector by another vector or matrix   Patrick Aboyoun
• [BioC] Adding annotations to fit2   Cei Abreu-Goodger
• [BioC] Illustrator import   Cei Abreu-Goodger
• [BioC] topGO enrichment using ensembl gene list   Adrian Alexa
• [BioC] present/absent on 2-color oligo arrays   Naomi Altman
• [BioC] present/absent on 2-color oligo arrays   Naomi Altman
• [BioC] Normalization of bi-modal expression data   Naomi Altman
• [BioC] two color arrays normalization   Naomi Altman
• [BioC] two color arrays normalization   Naomi Altman
• [BioC] two color arrays normalization   Naomi Altman
• [BioC] edgeR and sagenhaft   Naomi Altman
• [BioC] Fwd: Re: edgeR and sagenhaft   Naomi Altman
• [BioC] Yet another nested design in limma   Naomi Altman
• [BioC] two color arrays normalization   Naomi Altman
• [BioC] edgeR and sagenhaft   Naomi Altman
• [BioC] edgeR and sagenhaft   Naomi Altman
• [BioC] ...another question about using weights on microarray analysis   Naomi Altman
• [BioC] Draft paper submission deadline extended: BCBGC-09   Naomi Altman
• [BioC] Test on correlations among a group of genes   Naomi Altman
• [BioC] Test on correlations among a group of genes   Naomi Altman
• [BioC] Account Status Notification   Alliance & Leicester- Online Banking
• [BioC] Reporting problem with annotation in biomaRt, Illumina arrays   Nenad Bartonicek
• [BioC] Reporting problem with annotation in biomaRt, Illumina arrays - correction   Nenad Bartonicek
• [BioC] Duplicate probesets in mouse4302   Henrik Bengtsson
• [BioC] why is the CMA package not available for windows??   Henrik Bengtsson
• [BioC] Problem with justSNPRMA, library "oligo"   Henrik Bengtsson
• [BioC] Re : missing value in plotDensity   Henrik Bengtsson
• [BioC] Creating Affymetrix CDF files   Henrik Bengtsson
• [BioC] Analysing RNA-seq data   Ingunn Berget
• [BioC] bioconductor   Ayyarappan Bharathi
• [BioC] Experimental design   Dr. Sanjay Bhatikar
• [BioC] Limma contrasts with model.matrix   Daniel Brewer
• [BioC] Limma: Contrasts comparing one factor to multiple others   Daniel Brewer
• [BioC] Normalization of bi-modal expression data   Christian Brière
• [BioC] Normalization of bi-modal expression data   Christian Brière
• [BioC] agi4x44kpreprocess package   Christian Brière
• [BioC] RGList to AffyBatch conversion   Christian Brière
• [BioC] Normalization of bi-modal expression data   Christian Brière
• [BioC] Analysing Agilent microarray data   Christian Brière
• [BioC] BSgenome, GenomeSearching.: "Injecting known SNPs in the chromosome sequences"   Vincent Carey
• [BioC] Boston Basics course registration nearly full   Vincent Carey
• [BioC] Boston bioconductor training registration now closed   Vincent Carey
• [BioC] Keep getting warning messages of package 'XYZ' was built under R version 2.8.1   Vincent Carey
• [BioC] org.Hs.eg.db -- Entrez ID to Gene Symbol conversion   Vincent Carey
• [BioC] Error in BioMart and wormbase   Marc Carlson
• [BioC] Problem using SQLForge for creating a custom annotation package   Marc Carlson
• [BioC] missing type2id function in BioIDMapper Package   Marc Carlson
• [BioC] Gostats with Yeast annotation   Marc Carlson
• [BioC] Gostats with Yeast annotation   Marc Carlson
• [BioC] makecdfenv problem   Marc Carlson
• [BioC] Where to download annotation package for Agilent human CGH 44B   Marc Carlson
• [BioC] How to use GOSlim with GOstats   Marc Carlson
• [BioC] Annotation for Medicago array (Affy)   Marc Carlson
• [BioC] ragene10st   Marc Carlson
• [BioC] Keep getting warning messages of package 'XYZ' was built under R version 2.8.1   Marc Carlson
• [BioC] ragene10st   Marc Carlson
• [BioC] ragene10st   Marc Carlson
• [BioC] Gostats and custom list   Marc Carlson
• [BioC] Gostats and custom list   Marc Carlson
• [BioC] New Bioconductor package: qpgraph   Robert Castelo
• [BioC] interaction analysis   Robert Castelo
• [BioC] Test on correlations among a group of genes   Robert Castelo
• [BioC] read.maimages(limma) source="agilent" updated for 20-bit scanner?   Coleman, Ilsa
• [BioC] read.maimages(limma) source="agilent" updated for 20-bit scanner?   Coleman, Ilsa
• [BioC] read.maimages(limma) source="agilent" updated for 20-bitscanner?   Coleman, Ilsa
• [BioC] Annotation for Medicago array (Affy)   Ana Conesa
• [BioC] MBNI Custom CDF Announcement   Manhong Dai
• [BioC] ragene10st   Manhong Dai
• [BioC] Duplicate probesets in mouse4302   Sean Davis
• [BioC] print only rows where first string is present in a different file   Sean Davis
• [BioC] Normalization of bi-modal expression data   Sean Davis
• [BioC] agi4x44kpreprocess package   Sean Davis
• [BioC] MAS5 / Affy error   Sean Davis
• [BioC] agi4x44kpreprocess package   Sean Davis
• [BioC] Heatmap problem   Sean Davis
• [BioC] read.maimages(limma) source="agilent" updated for 20-bit scanner?   Sean Davis
• [BioC] [JOB] National Cancer Institute, Bethesda, MD   Sean Davis
• [BioC] illumina code   Sean Davis
• [BioC] At what point do you require an FDR: how many tests?   Sean Davis
• [BioC] Adding annotations to fit2 - still having problems   Sean Davis
• [BioC] Adding annotations to fit2 - still having problems   Sean Davis
• [BioC] Mapping GO term ID to Illumina probe ID for Illumina gene expression data   Sean Davis
• [BioC] About GEO submission of Illumina data by lumi   Sean Davis
• [BioC] About GEO submission of Illumina data by lumi   Sean Davis
• [BioC] problem regarding runtime of pamr.cv   Sean Davis
• [BioC] Test on correlations among a group of genes   Zeljko Debeljak
• [BioC] Jg. Goere beim extremw.ichsen erwischt   Delcina
• [BioC] Jessica (18) aus Rostock ist rasiert   Desdemona
• [BioC] Re : missing value in plotDensity   Jenny Drnevich
• [BioC] ...another question about using weights on microarray analysis   Jenny Drnevich
• [BioC] two color arrays normalization   Jenny Drnevich
• [BioC] Confusing results   Jenny Drnevich
• [BioC] two color arrays normalization   Jenny Drnevich
• [BioC] ...another question about using weights on microarray analysis   Jenny Drnevich
• [BioC] ...another question about using weights on microarray analysis   Jenny Drnevich
• [BioC] two color arrays normalization   Jenny Drnevich
• [BioC] two color arrays normalization   Jenny Drnevich
• [BioC] genefilter displaying the expression set   Jenny Drnevich
• [BioC] [Fwd: Reporting problem with annotation in biomaRt, Illumina arrays - correction]   Pan Du
• [BioC] Mapping GO term ID to Illumina probe ID for Illumina gene expression data   Pan Du
• [BioC] About GEO submission of Illumina data by lumi   Pan Du
• [BioC] About GEO submission of Illumina data by lumi   Pan Du
• [BioC] About GEO submission of Illumina data by lumi   Pan Du
• [BioC] About GEO submission of Illumina data by lumi   Pan Du
• [BioC] About GEO submission of Illumina data by lumi   Pan Du
• [BioC] About GEO submission of Illumina data by lumi   Pan Du
• [BioC] Draft paper submission deadline extended: BCBGC-09   John Edward
• [BioC] Draft paper submission deadline extended: BCBGC-09   John Edward
• [BioC] replicate spots using dupcor in package limma   Kevin J Emerson
• [BioC] "Size" in summary() of "hyperGTest()   Seth Falcon
• [BioC] Select an affybatch subset prior to normalization   Javier Pérez Florido
• [BioC] Kim Swan is New Leader of the United Bermuda Party   Proposed $150M Deal; Prof Gadzama‏
• [BioC] Normalization of bi-modal expression data   Balasubramanian Ganesan
• [BioC] two color arrays normalization   Giusy Della Gatta
• [BioC] two color arrays normalization   Giusy Della Gatta
• [BioC] two color arrays normalization   Giusy Della Gatta
• [BioC] two color arrays normalization   Giusy Della Gatta
• [BioC] two color arrays normalization   Giusy Della Gatta
• [BioC] two color arrays normalization   Giusy Della Gatta
• [BioC] Save rma normalization results for later use   Laurent Gatto
• [BioC] SimpeAffy: how to get/generate qcdef file?   Renaud Gaujoux
• [BioC] SimpeAffy: how to get/generate qcdef file?   Renaud Gaujoux
• [BioC] SimpeAffy: how to get/generate qcdef file?   Renaud Gaujoux
• [BioC] RGList to AffyBatch conversion   Laurent Gautier
• [BioC] error in ls() unused arguments   Laurent Gautier
• [BioC] error in ls() unused arguments   Laurent Gautier
• [BioC] error in ls() unused arguments   Laurent Gautier
• [BioC] Save rma normalization results for later use   Laurent Gautier
• [BioC] Heatmap without using clustering result   Laurent Gautier
• [BioC] GSEA to discover co-regulated genes   Paul Geeleher
• [BioC] Duplicate probesets in mouse4302   Paul Geeleher
• [BioC] Debugging of generic functions   Robert Gentleman
• [BioC] "Size" in summary() of "hyperGTest()   Robert Gentleman
• [BioC] cannot access annotation from ExpressionSet in Bioc-Devel   Robert Gentleman
• [BioC] Bioconductor affy package installation issues   Robert Gentleman
• [BioC] ragene10st   Sebastien Gerega
• [BioC] ragene10st   Sebastien Gerega
• [BioC] ragene10st   Sebastien Gerega
• [BioC] R/BioC workshops in Southern California   Thomas Girke
• [BioC] R: Important Notice!   Alberto Goldoni
• [BioC] Any package for time course microarray data analysis?   Nishant Gopalakrishnan
• [BioC] Experimental design   Priscila Grynberg
• [BioC] Experimental design   Priscila Grynberg
• [BioC] Timecourse package   Priscila Grynberg
• [BioC] Timecourse package   Priscila Grynberg
• [BioC] Timecourse package   Priscila Grynberg
• [BioC] Timecourse package   Priscila Grynberg
• [BioC] Timecourse package   Priscila Grynberg
• [BioC] Timecourse package   Priscila Grynberg
• [BioC] Adjusted p values in limma   Jordi Altirriba Gutiérrez
• [BioC] (no subject)   Jordi Altirriba Gutiérrez
• [BioC] Exonmap - get probeset genome position   Paul Hammer
• [BioC] Exonmap - get probeset genome position   Paul Hammer
• [BioC] Exonmap - get probeset genome position   Paul Hammer
• [BioC] Installing xps on Mac OS 10.4.11.   Thomas Hampton
• [BioC] present/absent on 2-color oligo arrays   Kasper Daniel Hansen
• [BioC] Using htmlpage   Kasper Daniel Hansen
• [BioC] Running time for make.cdf.package   Kasper Daniel Hansen
• [BioC] Running time for make.cdf.package   Kasper Daniel Hansen
• [BioC] cannot access annotation from ExpressionSet in Bioc-Devel   Kasper Daniel Hansen
• [BioC] Group-wise gcrma normalization   Kasper Daniel Hansen
• [BioC] How to install chipseq package   Yuan Hao
• [BioC] RefPlus error   Harbron, Chris
• [BioC] Any package for time course microarray data analysis?   Johan van Heerden
• [BioC] Annotation for Medicago array (Affy)   Hooiveld, Guido
• [BioC] old version of affy package 1.5.8   Wolfgang Huber
• [BioC] Normalization of bi-modal expression data   Wolfgang Huber
• [BioC] Normalization of bi-modal expression data   Wolfgang Huber
• [BioC] Re : missing value in plotDensity   Wolfgang Huber
• [BioC] Running time for make.cdf.package   Wolfgang Huber
• [BioC] [Fwd: Reporting problem with annotation in biomaRt, Illumina arrays]   Wolfgang Huber
• [BioC] Save rma normalization results for later use   Wolfgang Huber
• [BioC] Heatmap without using clustering result   Wolfgang Huber
• [BioC] Bioconductor affy package installation issues   Wolfgang Huber
• [BioC] ICNC'09-FSKD'09: Extended Deadline 10 March   ICNC'09-FSKD'09
• [BioC] ICNC'09-FSKD'09 Final Call: Extended Deadline 10 March   ICNC'09-FSKD'09
• [BioC] Yet another nested design in limma   Paolo Innocenti
• [BioC] Running time for make.cdf.package   Jiang, Zhen
• [BioC] Running time for make.cdf.package   Jiang, Zhen
• [BioC] Running time for make.cdf.package   Jiang, Zhen
• [BioC] Ringo question   Jianping Jin
• [BioC] Are you Lost on the Marketing Concept -   Leslie Jolliff
• [BioC] Blutjunge Schlampe will hart f-icken   Justine
• Le monde des Finances est maintenant accessible à tous.   Katie
• [BioC] cannot access annotation from ExpressionSet in Bioc-Devel   Mark Kimpel
• [BioC] biomart package - error querying for ensembl gene ID in snp mart   Rhoda Kinsella
• [BioC] biomart package - error querying for ensembl gene ID in snp mart   Rhoda Kinsella
• [BioC] biomart package - error querying for ensembl gene ID in snp mart   Rhoda Kinsella
• [BioC] biomart package - error querying for ensembl gene ID in snp mart   Rhoda Kinsella
• [BioC] agi4x44kpreprocess package   Charles Kishore
• [BioC] agi4x44kpreprocess package   Charles Kishore
• [BioC] BioC 2.2 release update.packages error   Elliot Kleiman
• [BioC] Error in assign while calling the vmatchPattern function   Hans-Ulrich Klein
• [BioC] GSEABase GOCollection wrong ontology   Hans-Ulrich Klein
• [BioC] Debugging of generic functions   Matthias Kohl
• [BioC] Analysing RNA-seq data   Yinglei Lai
• [BioC] Normalization of bi-modal expression data   Marcelo Laia
• [BioC] Problem using SQLForge for creating a custom annotation package   Asta Laiho
• [BioC] Problem using SQLForge for creating a custom annotation package   Asta Laiho
• [BioC] browseGenome width question (rtracklayer)   Michael Lawrence
• [BioC] Cannot receive data tracks back rtracklayer session   Michael Lawrence
• [BioC] GUI designing   Michael Lawrence
• [BioC] Analysing RNA-seq data   Michael Lawrence
• [BioC] IRanges: find containment and not just overlap   Michael Lawrence
• [BioC] IRanges: find containment and not just overlap   Michael Lawrence
• [BioC] Suggestions for a library/plate sorting algorithm   Paul Leo
• [BioC] Any package for time course microarray data analysis?   Steve Lianoglou
• [BioC] GOstats Annotation Package   "Jörg Linde"
• [BioC] diferent pvalues for a treatment when other contrasts areremoved from targets file   James MacDonald
• [BioC] Adding annotations to fit2   James MacDonald
• [BioC] genefilter displaying the expression set   James MacDonald
• [BioC] problem regarding runtime of pamr.cv   James MacDonald
• [BioC] Using htmlpage   James W. MacDonald
• [BioC] Using htmlpage   James W. MacDonald
• [BioC] Using htmlpage   James W. MacDonald
• [BioC] old version of affy package 1.5.8   James W. MacDonald
• [BioC] old version of affy package 1.5.8   James W. MacDonald
• [BioC] Limma: Contrasts comparing one factor to multiple others   James W. MacDonald
• [BioC] makecdfenv problem   James W. MacDonald
• [BioC] makecdfenv problem   James W. MacDonald
• [BioC] Using htmlpage   James W. MacDonald
• [BioC] Using htmlpage   James W. MacDonald
• [BioC] Using htmlpage   James W. MacDonald
• [BioC] Repost of Error Message: Error in dim(data)<-dim: attempt to set an atrribute on NULL   James W. MacDonald
• [BioC] "Size" in summary() of "hyperGTest()   Sergei Manakov
• [BioC] "Size" in summary() of "hyperGTest()   Sergei Manakov
• [BioC] org.Hs.eg.db -- Entrez ID to Gene Symbol conversion   Seraya Maouche
• [BioC] Error in contrast.fit, LIMMA   David Martino
• [BioC] agi4x44kpreprocess package   Erika Melissari
• [BioC] agi4x44kpreprocess package   Erika Melissari
• [BioC] agi4x44kpreprocess package   Erika Melissari
• [BioC] agi4x44kpreprocess package   Erika Melissari
• [BioC] array/spot quality control procedure on gene expression microarrays: What weights?   Erika Melissari
• [BioC] ...another question about using weights on microarray analysis   Erika Melissari
• [BioC] ...another question about using weights on microarray analysis   Erika Melissari
• [BioC] Exonmap - get probeset genome position   Crispin Miller
• [BioC] Exonmap - get probeset genome position   Crispin Miller
• [BioC] RGList class is really slow, why?   Martin Morgan
• [BioC] memory exhausted for readAligned   Martin Morgan
• [BioC] memory exhausted for readAligned   Martin Morgan
• [BioC] Repost of Error Message: Error in dim(data)<-dim: attempt to set an atrribute on NULL   Martin Morgan
• [BioC] Error with GeneSetCollection - Pfam or Chrloc   Martin Morgan
• [BioC] shortReads   Martin Morgan
• [BioC] genefilter displaying the expression set   Martin Morgan
• [BioC] Bioconductor affy package installation issues   Martin Morgan
• [BioC] GSEABase GOCollection wrong ontology   Martin Morgan
• [BioC] print only rows where first string is present in a different file   Laura Rodriguez Murillo
• [BioC] [Fwd: Re: Duplicate probesets in mouse4302]   Naira Naouar
• [BioC] gpr format from SMD database: where is the gal file or identifiers list therefore?   Gunter Neumann
• [BioC] Experimental design   Michal Okoniewski
• [BioC] qPCR 2009 Event Agenda Online   qPCR 2009 Event Agenda Online
• [BioC] why is the CMA package not available for windows??   Ortiz, Maria
• [BioC] qPCR NEWS - February 2009   qPCR Platform - the reference in real-time PCR
• [BioC] getSeq human genomic sequences   Hervé Pagès
• [BioC] BSgenome, GenomeSearching.: "Injecting known SNPs in the chromosome sequences"   Hervé Pagès
• [BioC] how to modify a Biostrings object   Hervé Pagès
• [BioC] About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.   Hervé Pagès
• [BioC] Error in assign while calling the vmatchPattern function   Hervé Pagès
• [BioC] old version of affy package 1.5.8   Leonor Palmeira
• [BioC] old version of affy package 1.5.8   Leonor Palmeira
• [BioC] old version of affy package 1.5.8   Leonor Palmeira
• [BioC] old version of affy package 1.5.8   Leonor Palmeira
• [BioC] old version of affy package 1.5.8   Leonor Palmeira
• [BioC] [Bioc-devel] Install EBImage   Gregoire Pau
• [BioC] [Bioc-devel] Install EBImage   Gregoire Pau
• [BioC] biomaRt proxy issues   Steve Pederson
• [BioC] biomaRt proxy issues   Steve Pederson
• [BioC] Heatmap without using clustering result   Steve Pederson
• [BioC] agi4x44kpreprocess package   Francois Pepin
• [BioC] agi4x44kpreprocess package   Francois Pepin
• [BioC] Analysing Agilent microarray data   Francois Pepin
• [BioC] SNP analysis   Jean-Baptiste Poullet
• [BioC] IRanges: find containment and not just overlap   Elizabeth Purdom
• [BioC] IRanges: find containment and not just overlap   Elizabeth Purdom
• [BioC] using "lumi" package to read miRNA data   Nusrat Rabbee
• [BioC] PhD / PostDoc positions in Innsbruck, Austria   Johannes Rainer
• [BioC] xps rma() with HuGene-1_0-st-v1 on 64-bit architecture   Tim Rayner
• [BioC] xps rma() with HuGene-1_0-st-v1 on 64-bit architecture   Tim Rayner
• [BioC] GenomeGraphs plot colours (bug?)   Tim Rayner
• [BioC] HuGene as exon array (was: xps rma() with HuGene-1_0-st-v1 on 64-bit architecture)   Tim Rayner
• [BioC] About beadarray Quality Assessment and Detection P value   Matt Ritchie
• [BioC] ...another question about using weights on microarray analysis   Matt Ritchie
• [BioC] Error in contrast.fit, LIMMA   Mark Robinson
• [BioC] edgeR and sagenhaft   Mark Robinson
• [BioC] edgeR and sagenhaft   Mark Robinson
• [BioC] edgeR and sagenhaft   Mark Robinson
• [BioC] agi4x44kpreprocess package   Pedro López Romero
• [BioC] agi4x44kpreprocess package   Pedro López Romero
• [BioC] Queries on the 4x44PreProcess Package   Pedro López Romero
• [BioC] Analysing Agilent microarray data   Pedro López Romero
• [BioC] Save rma normalization results for later use   Christian Ruckert
• [BioC] RefPlus error   Christian Ruckert
• [BioC] Limma and post statistical filtering of genes   Sally
• [BioC] Limma- Filtering After Statistical Analysis   Sally
• [BioC] Error: : Error in dim(data) <- dim : attempt to set an attribute on NULL   Sally
• [BioC] Repost of Error Message: Error in dim(data)<-dim: attempt to set an atrribute on NULL   Sally
• [BioC] At what point do you require an FDR: how many tests?   Sally
• [BioC] Adding annotations to fit2   Sally
• [BioC] Adding annotations to fit2 - still having problems   Sally
• [BioC] Tinn-R   Lana Schaffer
• [BioC] memory exhausted for readAligned   Lana Schaffer
• [BioC] memory exhausted for readAligned   Lana Schaffer
• [BioC] memory exhausted for readAligned   Lana Schaffer
• [BioC] memory exhausted for readAligned   Lana Schaffer
• [BioC] shortReads   Lana Schaffer
• [BioC] Using htmlpage   Holger Schwender
• [BioC] SNP analysis   Holger Schwender
• [BioC] JOB UCSF   Mark Segal
• [BioC] BSgenome, GenomeSearching.: "Injecting known SNPs in the chromosome sequences"   Paul Shannon
• [BioC] rtracklayer/argo error: Error in .jcall("calhoun/gebo/ui/DesktopFrame"   Paul Shannon
• [BioC] how to modify a Biostrings object   Paul Shannon
• [BioC] General Dentists Listing for the United States   Eli O Shaw
• [BioC] Limma: Array weights question   Sim, Fraser
• [BioC] Illustrator import   Sim, Fraser
• [BioC] RGList class is really slow, why?   Skewes,Aaron
• [BioC] RGList class is really slow, why?   Skewes,Aaron
• [BioC] org.Hs.eg.db -- Entrez ID to Gene Symbol conversion   Tim Smith
• [BioC] RankAggreg package : Partial lists?   Tim Smith
• [BioC] Limma and post statistical filtering of genes   Gordon K Smyth
• [BioC] Limma: Array weights question   Gordon K Smyth
• [BioC] Limma- Filtering After Statistical Analysis   Gordon K Smyth
• [BioC] How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)   Gordon K Smyth
• [BioC] Analysing RNA-seq data   Gordon K Smyth
• [BioC] Important Notice!   Lauro Sumoy
• [BioC] H.E. Madame Ellen Johnson Sirleaf Event, Signed Book With Each Ticket!   THEORACLEGROUP.NET
• [BioC] Timecourse package   Yu Chuan Tai
• [BioC] Timecourse package   Yu Chuan Tai
• [BioC] Timecourse package   Yu Chuan Tai
• [BioC] Timecourse package   Yu Chuan Tai
• [BioC] Timecourse package   Yu Chuan Tai
• [BioC] Annotation package for Agilent human CGH 44B   Daren Tan
• [BioC] Where to download annotation package for Agilent human CGH 44B   Daren Tan
• [BioC] Keep getting warning messages of package 'XYZ' was built under R version 2.8.1   Daren Tan
• [BioC] Keep getting warning messages of package 'XYZ' was built under R version 2.8.1   Daren Tan
• [BioC] GEO submission of Affymetrix or Agilent data   Daren Tan
• [BioC] Important Notice!   Sunysb Maintenance Team
• [BioC] Vizualization of Microarray data using GenomeGraphs   Philippe Thomas
• [BioC] Debugging of generic functions   Philippe Thomas
• [BioC] GOstats Annotation Package   Joern Toedling
• [BioC] Gostats with Yeast annotation   Yolande Tra
• [BioC] Gostats with Yeast annotation   Yolande Tra
• [BioC] Bioconductor affy package installation issues   Boris Umylny
• [BioC] Bioconductor affy package installation issues   Boris Umylny
• [BioC] Bioconductor affy package installation issues   Boris Umylny
• [BioC] limma - interpreting factorial design   Bjoern Usadel
• [BioC] How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)   Dmitriy Verkhoturov
• [BioC] illumina code   Matthew Vitalone
• [BioC] Error with GeneSetCollection - Pfam or Chrloc   James Wagner
• [BioC] How to use GOSlim with GOstats   Iain Wallace
• [BioC] How to use GOSlim with GOstats   Iain Wallace
• [BioC] Gostats and custom list   Iain Wallace
• [BioC] Gostats and custom list   Iain Wallace
• [BioC] error in ls() unused arguments   Patrick Wijchers
• [BioC] error in ls() unused arguments   Patrick Wijchers
• [BioC] error in ls() unused arguments   Patrick Wijchers
• [BioC] Error in BioMart and wormbase   Christof Winter
• [BioC] Error in BioMart and wormbase   Christof Winter
• [BioC] org.Hs.eg.db -- Entrez ID to Gene Symbol conversion   Christof Winter
• [BioC] genefilter displaying the expression set   Peder Worning
• [BioC] Group-wise gcrma normalization   Jun Yin
• [BioC] CSHL course   John Zhang
• [BioC] CSHL course   John Zhang
• [BioC] [Bioc-devel] Install EBImage   Xu Zhang
• [BioC] diferent pvalues for a treatment when other contrasts are removed from targets file   Agnieszka Zmienko
• [BioC] thanks diferent pvalues for a treatment when other contrasts areremoved from targets file   Agnieszka Zmienko
• [BioC] Help: Problems with LmFit   julin at aecom.yu.edu
• [BioC] Problem with justSNPRMA, library "oligo"   alessio boattini
• [BioC] Problem with justSNPRMA, library "oligo"   alessio boattini
• [BioC] Problem with justSNPRMA, library "oligo"   alessio boattini
• [BioC] makecdfenv problem   colin clarke
• [BioC] Fwd: makecdfenv problem   colin clarke
• [BioC] makecdfenv problem   colin clarke
• [BioC] xps rma() with HuGene-1_0-st-v1 on 64-bit architecture   cstrato
• [BioC] HuGene as exon array (was: xps rma() with HuGene-1_0-st-v1 on 64-bit architecture)   cstrato
• [BioC] HuGene as exon array   cstrato
• [BioC] Installing xps on Mac OS 10.4.11.   cstrato
• [BioC] Security Accesed   desjardins
• [BioC] Cannot receive data tracks back rtracklayer session   tholzman at fhcrc.org
• [BioC] topGO enrichment using ensembl gene list   AlexThiemann at gmx.de
• [BioC] matchPdict error   burak kutlu
• [BioC] Re : missing value in plotDensity   julien laffaire
• [BioC] Re : missing value in plotDensity   julien laffaire
• [BioC] Using htmlpage   J.Oosting at lumc.nl
• [BioC] Error in assign while calling the vmatchPattern function   mattia pelizzola
• [BioC] Heatmap problem   hemant ritturaj
• [BioC] Heatmap problem   hemant ritturaj
• [BioC] understanding contrast matrix   hemant ritturaj
• [BioC] Confusing results   hemant ritturaj
• [BioC] genefilter displaying the expression set   dhaarini s
• [BioC] genefilter displaying the expression set   dhaarini s
• [BioC] missing type2id function in BioIDMapper Package   vasantika s
• [BioC] A question about read-in data in lumi   ssls sddd
• [BioC] biomart package - error querying for ensembl gene ID in snp mart   martin sikora
• [BioC] biomart package - error querying for ensembl gene ID in snp mart   martin sikora
• [BioC] biomart package - error querying for ensembl gene ID in snp mart   martin sikora
• [BioC] biomart package - error querying for ensembl gene ID in snp mart   martin sikora
• [BioC] Any package for time course microarray data analysis?   ss
• [BioC] About beadarray Quality Assessment and Detection P value   ss
• [BioC] Mapping GO term ID to Illumina probe ID for Illumina gene expression data   ss
• [BioC] Mapping GO term ID to Illumina probe ID for Illumina gene expression data   ss
• [BioC] About GEO submission of Illumina data by lumi   ss
• [BioC] About GEO submission of Illumina data by lumi   ss
• [BioC] About GEO submission of Illumina data by lumi   ss
• [BioC] About GEO submission of Illumina data by lumi   ss
• [BioC] About GEO submission of Illumina data by lumi   ss
• [BioC] About GEO submission of Illumina data by lumi   ss
• [BioC] About GEO submission of Illumina data by lumi   ss
• [BioC] About GEO submission of Illumina data by lumi   ss
• [BioC] About GEO submission of Illumina data by lumi   ss
• [BioC] Error in BioMart and wormbase   steffen at stat.Berkeley.EDU
• [BioC] biomaRt proxy issues   steffen at stat.Berkeley.EDU
• [BioC] Heatmap without using clustering result   gregory voisin
• [BioC] normalizing with control spots   alison waller
• [BioC] script line to multiply a vector by another vector or matrix   carol white
• [BioC] SimpeAffy: how to get/generate qcdef file?   claire wilson
• [BioC] SimpeAffy: how to get/generate qcdef file?   claire wilson
• [BioC] SimpeAffy: how to get/generate qcdef file?   claire wilson
• [BioC] Test on correlations among a group of genes   heyi xiao
• [BioC] Test on correlations among a group of genes   heyi xiao
• [BioC] 5 Courses*** R/Splus Fundamentals & R Advanced Programming: March - April 2009 at USA locations by XLSolutions Corp   sue at xlsolutions-corp.com
• [BioC] missing value in plotDensity   shirley zhang
• [BioC] Re : missing value in plotDensity   shirley zhang
• [BioC] GUI designing   பழனி கண்ணன். க

Last message date: Sat Feb 28 09:59:37 CET 2009
Archived on: Sat Feb 28 09:59:46 CET 2009

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