[BioC] Running time for make.cdf.package

[Wolfgang Huber]

Hi Jiang,

other people may have more specific suggestion on what to do with 
Window, but what does task manager say about the CPU usage and memory 
footprint of this R process?

Also, it is never a mistake to use the most recent release of 
R/Bioconductor, i.e. R 2.8.1 and Bioc 2.3

  Best wishes
	Wolfgang


Jiang, Zhen wrote:
> Dear list,
> 
> I have a CDF file of size 404,514KB.  I'm using the following code to
> build a package from it.
> 
> library(affy)
> library(makecdfenv)
> 
> ## CDF Package
> make.cdf.package("xxxx.CDF",
>                  species="Homo_sapiens",
>                  version="0.0.1",unlink=TRUE,
>                  verbose=TRUE)
> 
> It has been running for two and half days.  Is it because the CDF is too
> large for R to handle or something is wrong with my code?
> I have successfully build R packages for other much smaller CDF files
> using the same code, only with different CDF name.
> 
> The sessionInfo() is listed below.
> 
>> sessionInfo()
> R version 2.7.0 (2008-04-22) 
> i386-pc-mingw32 
> 
> locale:
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
> States.1252;LC_MONETARY=English_United
> States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
> 
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets  methods
> 
> [8] base     
> 
> other attached packages:
> [1] makecdfenv_1.18.0    affy_1.18.2          preprocessCore_1.2.1
> [4] affyio_1.8.1         Biobase_2.0.1       
> 
> Thank you very much.
> 
> Zhen Jiang
> 
> 
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-- 

Best wishes
      Wolfgang

----------------------------------------------------
Wolfgang Huber, EMBL-EBI, http://www.ebi.ac.uk/huber