[BioC] Exonmap - get probeset genome position
Paul Hammer
Paul.Hammer at p-t-p.de
Thu Feb 19 13:26:45 CET 2009
Hi folks,
is there a way to get the exact genome position of a probeset on a
affymetrix exon microarray chip. at the moment I do all analysis with
the package "exonmap". i know that it is possible to get the information
wheater a probeset is intronic, intergenic or exonic, but that is not
enough for me:)
thanks in advance,
paul
> sessionInfo()
R version 2.8.0 (2008-10-20)
x86_64-unknown-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] splines tools stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] exonmap_2.1.03 RMySQL_0.7-2 RColorBrewer_1.0-2
[4] genefilter_1.22.0 survival_2.34-1 affy_1.18.1
[7] preprocessCore_1.4.0 affyio_1.8.0 topGO_1.10.1
[10] SparseM_0.79 GO.db_2.2.0 AnnotationDbi_1.2.1
[13] RSQLite_0.7-0 DBI_0.2-4 Biobase_2.0.1
[16] graph_1.18.1
loaded via a namespace (and not attached):
[1] annotate_1.18.0 cluster_1.11.10
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