[BioC] two color arrays normalization

[Naomi Altman]

If there is no dye-swap, then what do you mean by "swapping of the colors"?

--Naomi

At 07:56 PM 2/9/2009, Giusy Della Gatta wrote:

>Hi everybody,
>
>I am analyzing two color Agilent microarrays
>by using LIMMA package.
>In my specific case the red channel is representing
>"the reference" while the green channel is "the treatment".
>Is it enough to use the Target File composition to specify the name 
>of  the samples
>and their corrispondet channels?  Or I have to use other specific commands
>to specify the "swapping" of the colors?
>
>Thank you in advance!
>Regards
>Giusy
>
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Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
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