[BioC] ragene10st

[Sebastien Gerega]

Hi Marc and thanks for your help. I've had a look at the SQLForge 
vignette and there are still a couple issues that are unclear to me.
Firstly, for the Rat Gene ST arrays is it possible to use any of the 
annotation files from the Affymetrix site as input for makeRATCHIP_DB in 
AnnotationDbi? If not, and the list of probes has to be manually created 
what is the best way to go about doing this?
thanks again,
Sebastien


Marc Carlson wrote:
> Hi Sebastien,
>
> We have just never had anyone ask for one before.  However, you can make
> a package for yourself if you follow the instructions in the SQLForge
> vignette in the AnnotationDbi package:
>
> http://www.bioconductor.org/packages/devel/bioc/html/AnnotationDbi.html
>
> Please let me know if you have further questions regarding this.
>
>   Marc
>
>
> Sebastien Gerega wrote:
>   
>> Hi,
>> I have been analysing human and mouse gene ST chips using a
>> combination of the Aroma package and the hugene10st.db and
>> mogene10st.db annotation packages. Now I am attempting to perform the
>> same on some rat gene ST chips but have unable to find the
>> corresponding annotations. Why is there no ragene10st?
>> thanks,
>> Sebastien
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>
>>     
>
>
>