[BioC] memory exhausted for readAligned

[Lana Schaffer]

Hi,
I am trying to read the alignment in a lane of Solexa data and ran out
of memory.  
I have 3.2G memory on my desktop computer.
Is there a setting I can use to have enough memory for the readAligned
command?
How much memory do i need?

Lana Schaffer
Biostatistics/Informatics
The Scripps Research Institute
DNA Array Core Facility
La Jolla, CA 92037
(858) 784-2263
(858) 784-2994
schaffer at scripps.edu