[BioC] memory exhausted for readAligned

Patrick Aboyoun paboyoun at fhcrc.org
Fri Feb 13 01:19:43 CET 2009

Could you provide your session information for you R session as well as 
the number of alignments you are trying to read in? My first guess is 
that you are running on a 32-bit architecture, but without more 
information we on the list can't help you very much.


Lana Schaffer wrote:
> Hi,
> I am trying to read the alignment in a lane of Solexa data and ran out
> of memory.  
> I have 3.2G memory on my desktop computer.
> Is there a setting I can use to have enough memory for the readAligned
> command?
> How much memory do i need?
> Lana Schaffer
> Biostatistics/Informatics
> The Scripps Research Institute
> DNA Array Core Facility
> La Jolla, CA 92037
> (858) 784-2263
> (858) 784-2994
> schaffer at scripps.edu 
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