[BioC] Any package for time course microarray data analysis?

[Nishant Gopalakrishnan]

Hi Steve

You can make use of the  Bioconductor task views to locate specific 
packages for analyzing time course micro array data.

The bioconductor task views can be found at

http://bioconductor.org/packages/release/BiocViews.html

The views provided by biocViews integrate the software, annotation data
and experiment data repositories provided by Bioconductor. Basically the
biocViews field in the Description file of each package determines the
views under which it appears in.

For packages that deal with time course stuff please take a look at the
TimeCourse subview under statistics.

http://bioconductor.org/packages/release/TimeCourse.html

Nishant



Steve Lianoglou wrote:
> Hi,
>
>> Hi! I am wondering whether you can suggest me some R packages
>> designed for analyzing time course microarray data.
>
>
> Yes, there appear to be several.
>
> Go to the bioconductor packages page:
>
> http://www.bioconductor.org/packages/release/bioc/
>
> And search in that page for the word "time". I see at least three
> packages there:
>
>  * maSigPro
>  * Mfuzz
>  * timecourse
>
> There may be more ... I haven't used any of them, so I really can't
> say too much more about it.
>
> HTH,
> -steve
>
> -- 
> Steve Lianoglou
> Graduate Student: Physiology, Biophysics and Systems Biology
> Weill Medical College of Cornell University
>
> http://cbio.mskcc.org/~lianos
>
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